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Items: 1 to 20 of 104

1.

In silico prediction of mRNA poly(A) sites in Chlamydomonas reinhardtii.

Wu X, Ji G, Zeng Y.

Mol Genet Genomics. 2012 Dec;287(11-12):895-907. doi: 10.1007/s00438-012-0725-5. Epub 2012 Oct 30.

PMID:
23108961
2.

Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms.

Zhao Z, Wu X, Kumar PK, Dong M, Ji G, Li QQ, Liang C.

G3 (Bethesda). 2014 Mar 13;4(5):871-83. doi: 10.1534/g3.114.010249.

3.

A classification-based prediction model of messenger RNA polyadenylation sites.

Ji G, Wu X, Shen Y, Huang J, Quinn Li Q.

J Theor Biol. 2010 Aug 7;265(3):287-96. doi: 10.1016/j.jtbi.2010.05.015. Epub 2010 May 26.

PMID:
20546757
4.

Characterization and prediction of mRNA alternative polyadenylation sites in rice genes.

Wu X, Zhao C, Su Y.

Biomed Mater Eng. 2014;24(6):3779-85. doi: 10.3233/BME-141207.

PMID:
25227094
5.

Alternative polyadenylation and gene expression regulation in plants.

Xing D, Li QQ.

Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):445-58. doi: 10.1002/wrna.59. Epub 2010 Nov 9. Review.

PMID:
21957029
6.

Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii.

Shen Y, Liu Y, Liu L, Liang C, Li QQ.

Genetics. 2008 May;179(1):167-76. doi: 10.1534/genetics.108.088971.

7.

Prediction of plant mRNA polyadenylation sites.

Wu X, Ji G, Li QQ.

Methods Mol Biol. 2015;1255:13-23. doi: 10.1007/978-1-4939-2175-1_2.

PMID:
25487200
8.

Prediction of mRNA polyadenylation sites by support vector machine.

Cheng Y, Miura RM, Tian B.

Bioinformatics. 2006 Oct 1;22(19):2320-5. Epub 2006 Jul 26.

PMID:
16870936
9.

Experimental Genome-Wide Determination of RNA Polyadenylation in Chlamydomonas reinhardtii.

Bell SA, Shen C, Brown A, Hunt AG.

PLoS One. 2016 Jan 5;11(1):e0146107. doi: 10.1371/journal.pone.0146107. eCollection 2016.

10.

An in-silico method for prediction of polyadenylation signals in human sequences.

Liu H, Han H, Li J, Wong L.

Genome Inform. 2003;14:84-93.

PMID:
15706523
11.

Predictive modeling of plant messenger RNA polyadenylation sites.

Ji G, Zheng J, Shen Y, Wu X, Jiang R, Lin Y, Loke JC, Davis KM, Reese GJ, Li QQ.

BMC Bioinformatics. 2007 Feb 7;8:43.

12.

Characterization and prediction of mRNA polyadenylation sites in human genes.

Chang TH, Wu LC, Chen YT, Huang HD, Liu BJ, Cheng KF, Horng JT.

Med Biol Eng Comput. 2011 Apr;49(4):463-72. doi: 10.1007/s11517-011-0732-4. Epub 2011 Feb 1.

PMID:
21286831
13.

Poly(A) motif prediction using spectral latent features from human DNA sequences.

Xie B, Jankovic BR, Bajic VB, Song L, Gao X.

Bioinformatics. 2013 Jul 1;29(13):i316-25. doi: 10.1093/bioinformatics/btt218.

14.

POLYAR, a new computer program for prediction of poly(A) sites in human sequences.

Akhtar MN, Bukhari SA, Fazal Z, Qamar R, Shahmuradov IA.

BMC Genomics. 2010 Nov 19;11:646. doi: 10.1186/1471-2164-11-646.

15.

Prediction of polyadenylation signals in human DNA sequences using nucleotide frequencies.

Ahmed F, Kumar M, Raghava GP.

In Silico Biol. 2009;9(3):135-48.

PMID:
19795571
16.

A multispecies polyadenylation site model.

Ho ES, Gunderson SI, Duffy S.

BMC Bioinformatics. 2013;14 Suppl 2:S9. doi: 10.1186/1471-2105-14-S2-S9. Epub 2013 Jan 21.

17.

Conservation of alternative polyadenylation patterns in mammalian genes.

Ara T, Lopez F, Ritchie W, Benech P, Gautheret D.

BMC Genomics. 2006 Jul 26;7:189.

18.

Structure of nuclear-localized cox3 genes in Chlamydomonas reinhardtii and in its colorless close relative Polytomella sp.

Pérez-Martínez X, Funes S, Tolkunova E, Davidson E, King MP, González-Halphen D.

Curr Genet. 2002 Mar;40(6):399-404. Epub 2002 Feb 13.

PMID:
11919679
19.

Poly(A) code analyses reveal key determinants for tissue-specific mRNA alternative polyadenylation.

Weng L, Li Y, Xie X, Shi Y.

RNA. 2016 Jun;22(6):813-21. doi: 10.1261/rna.055681.115. Epub 2016 Apr 19.

20.

An improved poly(A) motifs recognition method based on decision level fusion.

Zhang S, Han J, Liu J, Zheng J, Liu R.

Comput Biol Chem. 2015 Feb;54:49-56. doi: 10.1016/j.compbiolchem.2014.12.001. Epub 2014 Dec 30.

PMID:
25594576

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