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Items: 1 to 20 of 120

1.

Rare variant discovery and calling by sequencing pooled samples with overlaps.

Wang W, Yin X, Soo Pyon Y, Hayes M, Li J.

Bioinformatics. 2013 Jan 1;29(1):29-38. doi: 10.1093/bioinformatics/bts645. Epub 2012 Oct 27.

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Quantitative group testing-based overlapping pool sequencing to identify rare variant carriers.

Cao CC, Li C, Sun X.

BMC Bioinformatics. 2014 Jun 17;15:195. doi: 10.1186/1471-2105-15-195.

4.

Identifying rare variants with optimal depth of coverage and cost-effective overlapping pool sequencing.

Cao CC, Li C, Huang Z, Ma X, Sun X.

Genet Epidemiol. 2013 Dec;37(8):820-30. doi: 10.1002/gepi.21769. Epub 2013 Oct 28.

5.

SNP calling by sequencing pooled samples.

Raineri E, Ferretti L, Esteve-Codina A, Nevado B, Heath S, Pérez-Enciso M.

BMC Bioinformatics. 2012 Sep 20;13:239. doi: 10.1186/1471-2105-13-239.

6.

Efficient identification of rare variants in large populations: deep re-sequencing the CRP locus in the CARDIA study.

Chen CT, McDavid AN, Kahsai OJ, Zebari AS, Carlson CS.

Nucleic Acids Res. 2013 Apr;41(7):e85. doi: 10.1093/nar/gkt092. Epub 2013 Feb 13.

7.

Detection of rare genomic variants from pooled sequencing using SPLINTER.

Vallania F, Ramos E, Cresci S, Mitra RD, Druley TE.

J Vis Exp. 2012 Jun 23;(64). pii: 3943. doi: 10.3791/3943.

8.

A statistical method for the detection of variants from next-generation resequencing of DNA pools.

Bansal V.

Bioinformatics. 2010 Jun 15;26(12):i318-24. doi: 10.1093/bioinformatics/btq214.

9.

Biases and errors on allele frequency estimation and disease association tests of next-generation sequencing of pooled samples.

Chen X, Listman JB, Slack FJ, Gelernter J, Zhao H.

Genet Epidemiol. 2012 Sep;36(6):549-60. doi: 10.1002/gepi.21648. Epub 2012 Jun 6.

10.

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing.

Ramos E, Levinson BT, Chasnoff S, Hughes A, Young AL, Thornton K, Li A, Vallania FL, Province M, Druley TE.

BMC Genomics. 2012 Dec 6;13:683. doi: 10.1186/1471-2164-13-683.

11.

Overlapping pools for high-throughput targeted resequencing.

Prabhu S, Pe'er I.

Genome Res. 2009 Jul;19(7):1254-61. doi: 10.1101/gr.088559.108. Epub 2009 May 15.

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13.

Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples.

Wang T, Pradhan K, Ye K, Wong LJ, Rohan TE.

Front Genet. 2011 Aug 17;2:51. doi: 10.3389/fgene.2011.00051. eCollection 2011.

14.

Efficient and cost effective population resequencing by pooling and in-solution hybridization.

Bansal V, Tewhey R, Leproust EM, Schork NJ.

PLoS One. 2011 Mar 30;6(3):e18353. doi: 10.1371/journal.pone.0018353.

15.

On optimal pooling designs to identify rare variants through massive resequencing.

Lee JS, Choi M, Yan X, Lifton RP, Zhao H.

Genet Epidemiol. 2011 Apr;35(3):139-47. doi: 10.1002/gepi.20561. Epub 2011 Jan 19.

16.

vipR: variant identification in pooled DNA using R.

Altmann A, Weber P, Quast C, Rex-Haffner M, Binder EB, Müller-Myhsok B.

Bioinformatics. 2011 Jul 1;27(13):i77-84. doi: 10.1093/bioinformatics/btr205.

17.

Pooled-DNA Sequencing for Elucidating New Genomic Risk Factors, Rare Variants Underlying Alzheimer's Disease.

Jin SC, Benitez BA, Deming Y, Cruchaga C.

Methods Mol Biol. 2016;1303:299-314. doi: 10.1007/978-1-4939-2627-5_18.

PMID:
26235075
18.

Weighted pooling--practical and cost-effective techniques for pooled high-throughput sequencing.

Golan D, Erlich Y, Rosset S.

Bioinformatics. 2012 Jun 15;28(12):i197-206. doi: 10.1093/bioinformatics/bts208.

19.

Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples.

Mullen MP, Creevey CJ, Berry DP, McCabe MS, Magee DA, Howard DJ, Killeen AP, Park SD, McGettigan PA, Lucy MC, Machugh DE, Waters SM.

BMC Genomics. 2012 Jan 11;13:16. doi: 10.1186/1471-2164-13-16.

20.

Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis.

Niranjan TS, Adamczyk A, Bravo HC, Taub MA, Wheelan SJ, Irizarry R, Wang T.

Genome Biol. 2011 Sep 28;12(9):R93. doi: 10.1186/gb-2011-12-9-r93.

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