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Items: 1 to 20 of 144

1.

Image analysis and empirical modeling of gene and protein expression.

Trisnadi N, Altinok A, Stathopoulos A, Reeves GT.

Methods. 2013 Jul 15;62(1):68-78. doi: 10.1016/j.ymeth.2012.09.016. Epub 2012 Oct 24.

2.

Quantitative imaging of the Dorsal nuclear gradient reveals limitations to threshold-dependent patterning in Drosophila.

Liberman LM, Reeves GT, Stathopoulos A.

Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22317-22. doi: 10.1073/pnas.0906227106. Epub 2009 Dec 16.

3.

Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo.

Papatsenko D, Levine M.

Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):4966-71. Epub 2005 Mar 28.

4.

Evaluating thermodynamic models of enhancer activity on cellular resolution gene expression data.

Samee AH, Sinha S.

Methods. 2013 Jul 15;62(1):79-90. doi: 10.1016/j.ymeth.2013.03.005. Epub 2013 Apr 26.

PMID:
23624421
5.

Identification of Ind transcription activation and repression domains required for dorsoventral patterning of the CNS.

Von Ohlen TL, Moses C.

Mech Dev. 2009 Jul;126(7):552-62. doi: 10.1016/j.mod.2009.03.008. Epub 2009 Apr 5.

6.

A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design.

Martinez CA, Barr KA, Kim AR, Reinitz J.

Methods. 2013 Jul 15;62(1):91-8. doi: 10.1016/j.ymeth.2013.05.014. Epub 2013 Jun 1.

7.

Combinatorial patterning mechanisms in the Drosophila embryo.

Chopra VS, Levine M.

Brief Funct Genomic Proteomic. 2009 Jul;8(4):243-9. doi: 10.1093/bfgp/elp026. Epub 2009 Aug 3. Review.

PMID:
19651703
8.

Size-dependent regulation of dorsal-ventral patterning in the early Drosophila embryo.

Garcia M, Nahmad M, Reeves GT, Stathopoulos A.

Dev Biol. 2013 Sep 1;381(1):286-99. doi: 10.1016/j.ydbio.2013.06.020. Epub 2013 Jun 22.

9.

Temporal dynamics, spatial range, and transcriptional interpretation of the Dorsal morphogen gradient.

Rushlow CA, Shvartsman SY.

Curr Opin Genet Dev. 2012 Dec;22(6):542-6. doi: 10.1016/j.gde.2012.08.005. Epub 2012 Sep 13. Review.

PMID:
22981910
10.

Dorsal-ventral gene expression in the Drosophila embryo reflects the dynamics and precision of the dorsal nuclear gradient.

Reeves GT, Trisnadi N, Truong TV, Nahmad M, Katz S, Stathopoulos A.

Dev Cell. 2012 Mar 13;22(3):544-57. doi: 10.1016/j.devcel.2011.12.007. Epub 2012 Feb 16.

11.

Conservation of enhancer location in divergent insects.

Cande J, Goltsev Y, Levine MS.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14414-9. doi: 10.1073/pnas.0905754106. Epub 2009 Aug 3.

12.

Computational models for neurogenic gene expression in the Drosophila embryo.

Zinzen RP, Senger K, Levine M, Papatsenko D.

Curr Biol. 2006 Jul 11;16(13):1358-65. Epub 2006 Jun 6.

13.

Role of en and novel interactions between msh, ind, and vnd in dorsoventral patterning of the Drosophila brain and ventral nerve cord.

Seibert J, Urbach R.

Dev Biol. 2010 Oct 15;346(2):332-45. doi: 10.1016/j.ydbio.2010.07.024. Epub 2010 Jul 29.

14.

Ems and Nkx6 are central regulators in dorsoventral patterning of the Drosophila brain.

Seibert J, Volland D, Urbach R.

Development. 2009 Dec;136(23):3937-47. doi: 10.1242/dev.041921.

16.

Uncoupling dorsal-mediated activation from dorsal-mediated repression in the Drosophila embryo.

Ratnaparkhi GS, Jia S, Courey AJ.

Development. 2006 Nov;133(22):4409-14. Epub 2006 Oct 11.

17.

Gene expression patterns in primary neuronal clusters of the Drosophila embryonic brain.

Sprecher SG, Reichert H, Hartenstein V.

Gene Expr Patterns. 2007 Apr;7(5):584-95. Epub 2007 Jan 17.

18.

Drosophila castor is regulated negatively by the Ubx and abdA genes, but positively by the AbdB gene.

Ahn JH, Yoo S, Park HJ, Jung KI, Kim SH, Jeon SH.

Int J Dev Biol. 2010;54(8-9):1251-8. doi: 10.1387/ijdb.093037ja.

19.

Segment-specific requirements for dorsoventral patterning genes during early brain development in Drosophila.

Urbach R, Volland D, Seibert J, Technau GM.

Development. 2006 Nov;133(21):4315-30.

20.

Patterning lessons from a dorsalized embryo.

Rosenberg MI, Desplan C.

Dev Cell. 2008 Apr;14(4):455-6. doi: 10.1016/j.devcel.2008.03.019.

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