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Items: 1 to 20 of 103

1.

Assessment of two immunodepletion methods: off-target effects and variations in immunodepletion efficiency may confound plasma proteomics.

Patel BB, Barrero CA, Braverman A, Kim PD, Jones KA, Chen DE, Bowler RP, Merali S, Kelsen SG, Yeung AT.

J Proteome Res. 2012 Dec 7;11(12):5947-58. doi: 10.1021/pr300686k. Epub 2012 Oct 29.

2.

IgY14 and SuperMix immunoaffinity separations coupled with liquid chromatography-mass spectrometry for human plasma proteomics biomarker discovery.

Shi T, Zhou JY, Gritsenko MA, Hossain M, Camp DG 2nd, Smith RD, Qian WJ.

Methods. 2012 Feb;56(2):246-53. doi: 10.1016/j.ymeth.2011.09.001. Epub 2011 Sep 10. Review.

3.

Depletion of abundant plasma proteins and limitations of plasma proteomics.

Tu C, Rudnick PA, Martinez MY, Cheek KL, Stein SE, Slebos RJ, Liebler DC.

J Proteome Res. 2010 Oct 1;9(10):4982-91. doi: 10.1021/pr100646w.

4.

Mining the human plasma proteome with three-dimensional strategies by high-resolution Quadrupole Orbitrap Mass Spectrometry.

Zhao Y, Chang C, Qin P, Cao Q, Tian F, Jiang J, Li X, Yu W, Zhu Y, He F, Ying W, Qian X.

Anal Chim Acta. 2016 Jan 21;904:65-75. doi: 10.1016/j.aca.2015.11.001. Epub 2015 Nov 25.

PMID:
26724764
5.

Assessment of reproducibility in depletion and enrichment workflows for plasma proteomics using label-free quantitative data-independent LC-MS.

Hakimi A, Auluck J, Jones GD, Ng LL, Jones DJ.

Proteomics. 2014 Jan;14(1):4-13. doi: 10.1002/pmic.201200563. Epub 2013 Nov 27.

PMID:
24167004
6.

Differences among techniques for high-abundant protein depletion.

Zolotarjova N, Martosella J, Nicol G, Bailey J, Boyes BE, Barrett WC.

Proteomics. 2005 Aug;5(13):3304-13.

PMID:
16052628
7.

Quantitative 2-D gel electrophoresis-based expression proteomics of albumin and IgG immunodepleted plasma.

Seferovic MD, Krughkov V, Pinto D, Han VK, Gupta MB.

J Chromatogr B Analyt Technol Biomed Life Sci. 2008 Apr 1;865(1-2):147-52. doi: 10.1016/j.jchromb.2008.01.052. Epub 2008 Feb 13.

PMID:
18325855
8.

Enhanced detection of low abundance human plasma proteins using a tandem IgY12-SuperMix immunoaffinity separation strategy.

Qian WJ, Kaleta DT, Petritis BO, Jiang H, Liu T, Zhang X, Mottaz HM, Varnum SM, Camp DG 2nd, Huang L, Fang X, Zhang WW, Smith RD.

Mol Cell Proteomics. 2008 Oct;7(10):1963-73. doi: 10.1074/mcp.M800008-MCP200. Epub 2008 Jul 15.

9.

Rat plasma proteomics: effects of abundant protein depletion on proteomic analysis.

Linke T, Doraiswamy S, Harrison EH.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Apr 15;849(1-2):273-81. Epub 2006 Dec 22.

PMID:
17188586
10.

A systematic analysis of the effects of increasing degrees of serum immunodepletion in terms of depth of coverage and other key aspects in top-down and bottom-up proteomic analyses.

Smith MP, Wood SL, Zougman A, Ho JT, Peng J, Jackson D, Cairns DA, Lewington AJ, Selby PJ, Banks RE.

Proteomics. 2011 Jun;11(11):2222-35. doi: 10.1002/pmic.201100005. Epub 2011 May 5.

11.

Comparative plasma proteome analysis of lymphoma-bearing SJL mice.

Bhat VB, Choi MH, Wishnok JS, Tannenbaum SR.

J Proteome Res. 2005 Sep-Oct;4(5):1814-25.

PMID:
16212437
12.

Accuracy and Reproducibility in Quantification of Plasma Protein Concentrations by Mass Spectrometry without the Use of Isotopic Standards.

Kramer G, Woolerton Y, van Straalen JP, Vissers JP, Dekker N, Langridge JI, Beynon RJ, Speijer D, Sturk A, Aerts JM.

PLoS One. 2015 Oct 16;10(10):e0140097. doi: 10.1371/journal.pone.0140097. eCollection 2015.

13.

Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma.

Echan LA, Tang HY, Ali-Khan N, Lee K, Speicher DW.

Proteomics. 2005 Aug;5(13):3292-303.

PMID:
16052620
14.

Performance evaluation of affinity ligands for depletion of abundant plasma proteins.

Kullolli M, Warren J, Arampatzidou M, Pitteri SJ.

J Chromatogr B Analyt Technol Biomed Life Sci. 2013 Nov 15;939:10-6. doi: 10.1016/j.jchromb.2013.09.008. Epub 2013 Sep 10.

PMID:
24090752
15.

Comparison of protein enrichment strategies for proteome analysis of plasma.

Bandow JE.

Proteomics. 2010 Apr;10(7):1416-25. doi: 10.1002/pmic.200900431.

PMID:
20127685
16.

In-Depth, Reproducible Analysis of Human Plasma Using IgY 14 and SuperMix Immunodepletion.

Beer LA, Ky B, Barnhart KT, Speicher DW.

Methods Mol Biol. 2017;1619:81-101. doi: 10.1007/978-1-4939-7057-5_7.

17.

Efficient prefractionation of low-abundance proteins in human plasma and construction of a two-dimensional map.

Cho SY, Lee EY, Lee JS, Kim HY, Park JM, Kwon MS, Park YK, Lee HJ, Kang MJ, Kim JY, Yoo JS, Park SJ, Cho JW, Kim HS, Paik YK.

Proteomics. 2005 Aug;5(13):3386-96.

PMID:
16047310
18.
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20.

Mouse-specific tandem IgY7-SuperMix immunoaffinity separations for improved LC-MS/MS coverage of the plasma proteome.

Zhou JY, Petritis BO, Petritis K, Norbeck AD, Weitz KK, Moore RJ, Camp DG, Kulkarni RN, Smith RD, Qian WJ.

J Proteome Res. 2009 Nov;8(11):5387-95. doi: 10.1021/pr900564f.

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