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Items: 1 to 20 of 166


Automated segmentation of mouse brain images using multi-atlas multi-ROI deformation and label fusion.

Nie J, Shen D.

Neuroinformatics. 2013 Jan;11(1):35-45. doi: 10.1007/s12021-012-9163-0.


Local label learning (LLL) for subcortical structure segmentation: application to hippocampus segmentation.

Hao Y, Wang T, Zhang X, Duan Y, Yu C, Jiang T, Fan Y; Alzheimer's Disease Neuroimaging Initiative.

Hum Brain Mapp. 2014 Jun;35(6):2674-97. doi: 10.1002/hbm.22359. Epub 2013 Oct 23.


MUSE: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters, and locally optimal atlas selection.

Doshi J, Erus G, Ou Y, Resnick SM, Gur RC, Gur RE, Satterthwaite TD, Furth S, Davatzikos C; Alzheimer's Neuroimaging Initiative.

Neuroimage. 2016 Feb 15;127:186-195. doi: 10.1016/j.neuroimage.2015.11.073. Epub 2015 Dec 8.


Multi-atlas segmentation of the whole hippocampus and subfields using multiple automatically generated templates.

Pipitone J, Park MT, Winterburn J, Lett TA, Lerch JP, Pruessner JC, Lepage M, Voineskos AN, Chakravarty MM; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2014 Nov 1;101:494-512. doi: 10.1016/j.neuroimage.2014.04.054. Epub 2014 Apr 29.


Hierarchical multi-atlas label fusion with multi-scale feature representation and label-specific patch partition.

Wu G, Kim M, Sanroma G, Wang Q, Munsell BC, Shen D; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2015 Feb 1;106:34-46. doi: 10.1016/j.neuroimage.2014.11.025. Epub 2014 Nov 20.


A multi-atlas based method for automated anatomical rat brain MRI segmentation and extraction of PET activity.

Lancelot S, Roche R, Slimen A, Bouillot C, Levigoureux E, Langlois JB, Zimmer L, Costes N.

PLoS One. 2014 Oct 17;9(10):e109113. doi: 10.1371/journal.pone.0109113. eCollection 2014.


A generative probability model of joint label fusion for multi-atlas based brain segmentation.

Wu G, Wang Q, Zhang D, Nie F, Huang H, Shen D.

Med Image Anal. 2014 Aug;18(6):881-90. doi: 10.1016/ Epub 2013 Nov 16.


A transversal approach for patch-based label fusion via matrix completion.

Sanroma G, Wu G, Gao Y, Thung KH, Guo Y, Shen D.

Med Image Anal. 2015 Aug;24(1):135-148. doi: 10.1016/ Epub 2015 Jun 20.


Multi-atlas segmentation with augmented features for cardiac MR images.

Bai W, Shi W, Ledig C, Rueckert D.

Med Image Anal. 2015 Jan;19(1):98-109. doi: 10.1016/ Epub 2014 Sep 19.


Nonlocal atlas-guided multi-channel forest learning for human brain labeling.

Ma G, Gao Y, Wu G, Wu L, Shen D.

Med Phys. 2016 Feb;43(2):1003-19. doi: 10.1118/1.4940399.


A unified framework for cross-modality multi-atlas segmentation of brain MRI.

Eugenio Iglesias J, Rory Sabuncu M, Van Leemput K.

Med Image Anal. 2013 Dec;17(8):1181-91. doi: 10.1016/ Epub 2013 Aug 19.


A multi-atlas based method for automated anatomical Macaca fascicularis brain MRI segmentation and PET kinetic extraction.

Ballanger B, Tremblay L, Sgambato-Faure V, Beaudoin-Gobert M, Lavenne F, Le Bars D, Costes N.

Neuroimage. 2013 Aug 15;77:26-43. doi: 10.1016/j.neuroimage.2013.03.029. Epub 2013 Mar 26.


Multi-atlas skull-stripping.

Doshi J, Erus G, Ou Y, Gaonkar B, Davatzikos C.

Acad Radiol. 2013 Dec;20(12):1566-76. doi: 10.1016/j.acra.2013.09.010.


Multi-region labeling and segmentation using a graph topology prior and atlas information in brain images.

Al-Shaikhli SD, Yang MY, Rosenhahn B.

Comput Med Imaging Graph. 2014 Dec;38(8):725-34. doi: 10.1016/j.compmedimag.2014.06.008. Epub 2014 Jun 23.


Automatic hippocampus segmentation of 7.0 Tesla MR images by combining multiple atlases and auto-context models.

Kim M, Wu G, Li W, Wang L, Son YD, Cho ZH, Shen D.

Neuroimage. 2013 Dec;83:335-45. doi: 10.1016/j.neuroimage.2013.06.006. Epub 2013 Jun 11.


Construction of multi-region-multi-reference atlases for neonatal brain MRI segmentation.

Shi F, Yap PT, Fan Y, Gilmore JH, Lin W, Shen D.

Neuroimage. 2010 Jun;51(2):684-93. doi: 10.1016/j.neuroimage.2010.02.025. Epub 2010 Feb 17.


Automatic structural parcellation of mouse brain MRI using multi-atlas label fusion.

Ma D, Cardoso MJ, Modat M, Powell N, Wells J, Holmes H, Wiseman F, Tybulewicz V, Fisher E, Lythgoe MF, Ourselin S.

PLoS One. 2014 Jan 27;9(1):e86576. doi: 10.1371/journal.pone.0086576. eCollection 2014.


[Medical image segmentation based on guided filtering and multi-atlas].

Wen R, Chen H, Zhang L, Lu Z.

Nan Fang Yi Ke Da Xue Xue Bao. 2015 Aug;35(9):1263-7. Chinese.


A fast atlas pre-selection procedure for multi-atlas based brain segmentation.

Ma J, Ma HT, Li H, Ye C, Wu D, Tang X, Miller M, Mori S.

Conf Proc IEEE Eng Med Biol Soc. 2015;2015:3053-6. doi: 10.1109/EMBC.2015.7319036.


Multi-scale patch and multi-modality atlases for whole heart segmentation of MRI.

Zhuang X, Shen J.

Med Image Anal. 2016 Jul;31:77-87. doi: 10.1016/ Epub 2016 Mar 4.


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