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Items: 1 to 20 of 191

1.

GlycReSoft: a software package for automated recognition of glycans from LC/MS data.

Maxwell E, Tan Y, Tan Y, Hu H, Benson G, Aizikov K, Conley S, Staples GO, Slysz GW, Smith RD, Zaia J.

PLoS One. 2012;7(9):e45474. doi: 10.1371/journal.pone.0045474.

2.

Targeted analysis of glycomics liquid chromatography/mass spectrometry data.

Dreyfuss JM, Jacobs C, Gindin Y, Benson G, Staples GO, Zaia J.

Anal Bioanal Chem. 2011 Jan;399(2):727-35. doi: 10.1007/s00216-010-4235-1.

3.
4.

GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization.

Kronewitter SR, Slysz GW, Marginean I, Hagler CD, LaMarche BL, Zhao R, Harris MY, Monroe ME, Polyukh CA, Crowell KL, Fillmore TL, Carlson TS, Camp DG 2nd, Moore RJ, Payne SH, Anderson GA, Smith RD.

Anal Chem. 2014 Jul 1;86(13):6268-76. doi: 10.1021/ac501492f.

5.

Novel data analysis tool for semiquantitative LC-MS-MS2 profiling of N-glycans.

Peltoniemi H, Natunen S, Ritamo I, Valmu L, Räbinä J.

Glycoconj J. 2013 Feb;30(2):159-70. doi: 10.1007/s10719-012-9412-3.

PMID:
22707226
6.

GAG-ID: Heparan Sulfate (HS) and Heparin Glycosaminoglycan High-Throughput Identification Software.

Chiu Y, Huang R, Orlando R, Sharp JS.

Mol Cell Proteomics. 2015 Jun;14(6):1720-30. doi: 10.1074/mcp.M114.045856.

7.

Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry.

Yu CY, Mayampurath A, Hu Y, Zhou S, Mechref Y, Tang H.

Bioinformatics. 2013 Jul 1;29(13):1706-7. doi: 10.1093/bioinformatics/btt190.

8.

Automating mass spectrometry-based quantitative glycomics using aminoxy tandem mass tag reagents with SimGlycan.

Meitei NS, Apte A, Snovida SI, Rogers JC, Saba J.

J Proteomics. 2015 Sep 8;127(Pt A):211-22. doi: 10.1016/j.jprot.2015.05.015.

PMID:
26003531
9.

GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans.

Ceroni A, Maass K, Geyer H, Geyer R, Dell A, Haslam SM.

J Proteome Res. 2008 Apr;7(4):1650-9. doi: 10.1021/pr7008252.

PMID:
18311910
10.

LC-MS/MS peptide mapping with automated data processing for routine profiling of N-glycans in immunoglobulins.

Shah B, Jiang XG, Chen L, Zhang Z.

J Am Soc Mass Spectrom. 2014 Jun;25(6):999-1011. doi: 10.1007/s13361-014-0858-3.

PMID:
24664809
11.
12.

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.

Jaitly N, Mayampurath A, Littlefield K, Adkins JN, Anderson GA, Smith RD.

BMC Bioinformatics. 2009 Mar 17;10:87. doi: 10.1186/1471-2105-10-87.

13.

A chip-based amide-HILIC LC/MS platform for glycosaminoglycan glycomics profiling.

Staples GO, Bowman MJ, Costello CE, Hitchcock AM, Lau JM, Leymarie N, Miller C, Naimy H, Shi X, Zaia J.

Proteomics. 2009 Feb;9(3):686-95. doi: 10.1002/pmic.200701008.

14.

Relative versus absolute quantitation in disease glycomics.

Moh ES, Thaysen-Andersen M, Packer NH.

Proteomics Clin Appl. 2015 Apr;9(3-4):368-82. doi: 10.1002/prca.201400184. Review.

PMID:
25684231
15.

Bioinformatics in glycomics: glycan characterization with mass spectrometric data using SimGlycan.

Apte A, Meitei NS.

Methods Mol Biol. 2010;600:269-81. doi: 10.1007/978-1-60761-454-8_19.

PMID:
19882135
16.

A computational framework for the automated construction of glycosylation reaction networks.

Liu G, Neelamegham S.

PLoS One. 2014 Jun 30;9(6):e100939. doi: 10.1371/journal.pone.0100939.

17.

Global and site-specific detection of human integrin alpha 5 beta 1 glycosylation using tandem mass spectrometry and the StrOligo algorithm.

Ethier M, Krokhin O, Ens W, Standing KG, Wilkins JA, Perreault H.

Rapid Commun Mass Spectrom. 2005;19(5):721-7.

PMID:
15702487
18.

Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method.

Cheng K, Chen R, Seebun D, Ye M, Figeys D, Zou H.

J Proteomics. 2014 Oct 14;110:145-54. doi: 10.1016/j.jprot.2014.08.006.

PMID:
25182382
19.

UniCarb-DB: a database resource for glycomic discovery.

Hayes CA, Karlsson NG, Struwe WB, Lisacek F, Rudd PM, Packer NH, Campbell MP.

Bioinformatics. 2011 May 1;27(9):1343-4. doi: 10.1093/bioinformatics/btr137.

20.

Structural feature ions for distinguishing N- and O-linked glycan isomers by LC-ESI-IT MS/MS.

Everest-Dass AV, Abrahams JL, Kolarich D, Packer NH, Campbell MP.

J Am Soc Mass Spectrom. 2013 Jun;24(6):895-906. doi: 10.1007/s13361-013-0610-4.

PMID:
23605685
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