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Items: 1 to 20 of 122

1.

Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks.

Magger O, Waldman YY, Ruppin E, Sharan R.

PLoS Comput Biol. 2012;8(9):e1002690. doi: 10.1371/journal.pcbi.1002690. Epub 2012 Sep 27.

2.

Tissue-specific functional networks for prioritizing phenotype and disease genes.

Guan Y, Gorenshteyn D, Burmeister M, Wong AK, Schimenti JC, Handel MA, Bult CJ, Hibbs MA, Troyanskaya OG.

PLoS Comput Biol. 2012;8(9):e1002694. doi: 10.1371/journal.pcbi.1002694. Epub 2012 Sep 27.

3.

Revisiting topological properties and models of protein-protein interaction networks from the perspective of dataset evolution.

Shao M, Zhou S, Guan J.

IET Syst Biol. 2015 Aug;9(4):113-9. doi: 10.1049/iet-syb.2014.0053.

PMID:
26243826
4.
5.

Discovering functional interaction patterns in protein-protein interaction networks.

Turanalp ME, Can T.

BMC Bioinformatics. 2008 Jun 11;9:276. doi: 10.1186/1471-2105-9-276.

6.

Application of graph colouring to biological networks.

Khor S.

IET Syst Biol. 2010 May;4(3):185-92. doi: 10.1049/iet-syb.2009.0038.

PMID:
20499999
7.

POINeT: protein interactome with sub-network analysis and hub prioritization.

Lee SA, Chan CH, Chen TC, Yang CY, Huang KC, Tsai CH, Lai JM, Wang FS, Kao CY, Huang CY.

BMC Bioinformatics. 2009 Apr 21;10:114. doi: 10.1186/1471-2105-10-114.

8.

Fitting a geometric graph to a protein-protein interaction network.

Higham DJ, Rasajski M, Przulj N.

Bioinformatics. 2008 Apr 15;24(8):1093-9. doi: 10.1093/bioinformatics/btn079. Epub 2008 Mar 14.

PMID:
18344248
9.

Modeling interactome: scale-free or geometric?

Przulj N, Corneil DG, Jurisica I.

Bioinformatics. 2004 Dec 12;20(18):3508-15. Epub 2004 Jul 29.

PMID:
15284103
10.

Disease gene-fishing in molecular interaction networks: a case study in colorectal cancer.

Huang H, Li J, Chen JY.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:6416-9. doi: 10.1109/IEMBS.2009.5333750.

PMID:
19964422
11.

Integration of genomic data for inferring protein complexes from global protein-protein interaction networks.

Zheng H, Wang H, Glass DH.

IEEE Trans Syst Man Cybern B Cybern. 2008 Feb;38(1):5-16. doi: 10.1109/TSMCB.2007.908912.

PMID:
18270078
12.

A topological measurement for weighted protein interaction network.

Pei P, Zhang A.

Proc IEEE Comput Syst Bioinform Conf. 2005:268-78.

PMID:
16447984
13.

Prioritization of potential candidate disease genes by topological similarity of protein-protein interaction network and phenotype data.

Luo J, Liang S.

J Biomed Inform. 2015 Feb;53:229-36. doi: 10.1016/j.jbi.2014.11.004. Epub 2014 Nov 15.

14.

Detecting Protein Complexes from Signed Protein-Protein Interaction Networks.

Ou-Yang L, Dai DQ, Zhang XF.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Nov-Dec;12(6):1333-44. doi: 10.1109/TCBB.2015.2401014.

PMID:
26671805
15.

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

BMC Bioinformatics. 2006 Apr 14;7:207.

16.

Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network.

Guo Z, Wang L, Li Y, Gong X, Yao C, Ma W, Wang D, Li Y, Zhu J, Zhang M, Yang D, Rao S, Wang J.

Bioinformatics. 2007 Aug 15;23(16):2121-8. Epub 2007 Jun 1. Erratum in: Bioinformatics. 2009 Jun 15;25(12):1574. Wang, Lei [added]; Rao, Shaoqi [added].

PMID:
17545181
17.

Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model.

Ni J, Koyuturk M, Tong H, Haines J, Xu R, Zhang X.

BMC Bioinformatics. 2016 Nov 10;17(1):453.

18.

Not all scale-free networks are born equal: the role of the seed graph in PPI network evolution.

Hormozdiari F, Berenbrink P, Przulj N, Sahinalp SC.

PLoS Comput Biol. 2007 Jul;3(7):e118.

19.

Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes.

Himmelstein DS, Baranzini SE.

PLoS Comput Biol. 2015 Jul 9;11(7):e1004259. doi: 10.1371/journal.pcbi.1004259. eCollection 2015 Jul.

20.

Functional coherence in domain interaction networks.

Pandey J, Koyut├╝rk M, Subramaniam S, Grama A.

Bioinformatics. 2008 Aug 15;24(16):i28-34. doi: 10.1093/bioinformatics/btn296.

PMID:
18689835

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