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Items: 1 to 20 of 147

1.

An algorithm for chemical genomic profiling that minimizes batch effects: bucket evaluations.

Shabtai D, Giaever G, Nislow C.

BMC Bioinformatics. 2012 Sep 25;13:245. doi: 10.1186/1471-2105-13-245.

2.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
3.

TOPS: a versatile software tool for statistical analysis and visualization of combinatorial gene-gene and gene-drug interaction screens.

Muellner MK, Duernberger G, Ganglberger F, Kerzendorfer C, Uras IZ, Schoenegger A, Bagienski K, Colinge J, Nijman SM.

BMC Bioinformatics. 2014 Apr 8;15:98. doi: 10.1186/1471-2105-15-98.

4.

Effect of data normalization on fuzzy clustering of DNA microarray data.

Kim SY, Lee JW, Bae JS.

BMC Bioinformatics. 2006 Mar 14;7:134.

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6.
7.

CLICK and EXPANDER: a system for clustering and visualizing gene expression data.

Sharan R, Maron-Katz A, Shamir R.

Bioinformatics. 2003 Sep 22;19(14):1787-99.

PMID:
14512350
8.

MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data.

Chi B, deLeeuw RJ, Coe BP, Ng RT, MacAulay C, Lam WL.

BMC Bioinformatics. 2008 May 20;9:243. doi: 10.1186/1471-2105-9-243.

9.
10.

Visualization methods for statistical analysis of microarray clusters.

Hibbs MA, Dirksen NC, Li K, Troyanskaya OG.

BMC Bioinformatics. 2005 May 12;6:115.

11.

Chemical-genetic approaches for exploring the mode of action of natural products.

Lopez A, Parsons AB, Nislow C, Giaever G, Boone C.

Prog Drug Res. 2008;66:237, 239-71. Review.

PMID:
18416308
12.

Scalable high-throughput identification of genetic targets by network filtering.

Bevilacqua V, Pannarale P.

BMC Bioinformatics. 2013;14 Suppl 8:S5. doi: 10.1186/1471-2105-14-S8-S5. Epub 2013 May 9.

13.

A systematic comparison of genome-scale clustering algorithms.

Jay JJ, Eblen JD, Zhang Y, Benson M, Perkins AD, Saxton AM, Voy BH, Chesler EJ, Langston MA.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S7. doi: 10.1186/1471-2105-13-S10-S7.

14.

Exploring matrix factorization techniques for significant genes identification of Alzheimer's disease microarray gene expression data.

Kong W, Mou X, Hu X.

BMC Bioinformatics. 2011;12 Suppl 5:S7. doi: 10.1186/1471-2105-12-S5-S7. Epub 2011 Jul 27.

15.

Micro-Analyzer: automatic preprocessing of Affymetrix microarray data.

Guzzi PH, Cannataro M.

Comput Methods Programs Biomed. 2013 Aug;111(2):402-9. doi: 10.1016/j.cmpb.2013.04.006. Epub 2013 May 31.

PMID:
23731720
16.

Clustering of diverse genomic data using information fusion.

Kasturi J, Acharya R.

Bioinformatics. 2005 Feb 15;21(4):423-9. Epub 2004 Dec 17.

PMID:
15608052
17.

Dynamic biclustering of microarray data by multi-objective immune optimization.

Liu J, Li Z, Hu X, Chen Y, Park EK.

BMC Genomics. 2011;12 Suppl 2:S11. doi: 10.1186/1471-2164-12-S2-S11. Epub 2011 Jul 27.

18.

A mixture model with random-effects components for clustering correlated gene-expression profiles.

Ng SK, McLachlan GJ, Wang K, Ben-Tovim Jones L, Ng SW.

Bioinformatics. 2006 Jul 15;22(14):1745-52. Epub 2006 May 3.

PMID:
16675467
19.

AnyExpress: integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm.

Kim J, Patel K, Jung H, Kuo WP, Ohno-Machado L.

BMC Bioinformatics. 2011 Mar 17;12:75. doi: 10.1186/1471-2105-12-75.

20.

Detecting clusters of different geometrical shapes in microarray gene expression data.

Kim DW, Lee KH, Lee D.

Bioinformatics. 2005 May 1;21(9):1927-34. Epub 2005 Jan 12.

PMID:
15647300

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