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Items: 1 to 20 of 77

1.

Path-preference cellular-automaton model for traffic flow through transit points and its application to the transcription process in human cells.

Ohta Y, Nishiyama A, Wada Y, Ruan Y, Kodama T, Tsuboi T, Tokihiro T, Ihara S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 1):021918. Epub 2012 Aug 21.

PMID:
23005796
2.

Cellular-automaton model of the cooperative dynamics of RNA polymerase II during transcription in human cells.

Ohta Y, Kodama T, Ihara S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Oct;84(4 Pt 1):041922. Epub 2011 Oct 19.

PMID:
22181190
3.

CTCF regulates Kaposi's sarcoma-associated herpesvirus latency transcription by nucleosome displacement and RNA polymerase programming.

Kang H, Cho H, Sung GH, Lieberman PM.

J Virol. 2013 Feb;87(3):1789-99. doi: 10.1128/JVI.02283-12. Epub 2012 Nov 28. Erratum in: J Virol. 2013 Apr;87(7):4127.

4.

RNA polymerase II collision interrupts convergent transcription.

Hobson DJ, Wei W, Steinmetz LM, Svejstrup JQ.

Mol Cell. 2012 Nov 9;48(3):365-74. doi: 10.1016/j.molcel.2012.08.027. Epub 2012 Oct 4.

5.

Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes.

Saeki H, Svejstrup JQ.

Mol Cell. 2009 Jul 31;35(2):191-205. doi: 10.1016/j.molcel.2009.06.009.

6.

Early effects of topoisomerase I inhibition on RNA polymerase II along transcribed genes in human cells.

Khobta A, Ferri F, Lotito L, Montecucco A, Rossi R, Capranico G.

J Mol Biol. 2006 Mar 17;357(1):127-38. Epub 2006 Jan 6.

PMID:
16427078
7.

DNA adducts from a tumorigenic metabolite of benzo[a]pyrene block human RNA polymerase II elongation in a sequence- and stereochemistry-dependent manner.

Perlow RA, Kolbanovskii A, Hingerty BE, Geacintov NE, Broyde S, Scicchitano DA.

J Mol Biol. 2002 Aug 2;321(1):29-47.

PMID:
12139931
8.

In vitro characterization of mutant yeast RNA polymerase II with reduced binding for elongation factor TFIIS.

Wu J, Awrey DE, Edwards AM, Archambault J, Friesen JD.

Proc Natl Acad Sci U S A. 1996 Oct 15;93(21):11552-7.

10.

Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1.

Karakasili E, Burkert-Kautzsch C, Kieser A, Sträßer K.

Nucleic Acids Res. 2014;42(16):10503-15. doi: 10.1093/nar/gku731. Epub 2014 Aug 12. Erratum in: Nucleic Acids Res. 2015 Feb 27;43(4):2486.

11.

DNA double helix unwinding triggers transcription block-dependent apoptosis: a semiquantitative probe of the response of ATM, RNAPII, and p53 to two DNA intercalators.

Zhang Z, Wang Y, Song T, Gao J, Wu G, Zhang J, Qian X.

Chem Res Toxicol. 2009 Mar 16;22(3):483-91. doi: 10.1021/tx800288v.

PMID:
19182866
12.
14.

Effect of 8-oxoguanine on transcription elongation by T7 RNA polymerase and mammalian RNA polymerase II.

Tornaletti S, Maeda LS, Kolodner RD, Hanawalt PC.

DNA Repair (Amst). 2004 May 4;3(5):483-94.

PMID:
15084310
15.

DNA intercalator stimulates influenza transcription and virus replication.

Li OT, Poon LL.

Virol J. 2011 Mar 15;8:120. doi: 10.1186/1743-422X-8-120.

16.

The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II.

Jimeno-González S, Haaning LL, Malagon F, Jensen TH.

Mol Cell. 2010 Feb 26;37(4):580-7. doi: 10.1016/j.molcel.2010.01.019.

17.

RNA polymerase II bypasses 8-oxoguanine in the presence of transcription elongation factor TFIIS.

Kuraoka I, Suzuki K, Ito S, Hayashida M, Kwei JS, Ikegami T, Handa H, Nakabeppu Y, Tanaka K.

DNA Repair (Amst). 2007 Jun 1;6(6):841-51. Epub 2007 Mar 19.

PMID:
17374514
18.

The SET2-RPB1 interaction domain of human RECQ5 is important for transcription-associated genome stability.

Li M, Xu X, Liu Y.

Mol Cell Biol. 2011 May;31(10):2090-9. doi: 10.1128/MCB.01137-10. Epub 2011 Mar 14.

19.

Dynamic reconfiguration of long human genes during one transcription cycle.

Larkin JD, Cook PR, Papantonis A.

Mol Cell Biol. 2012 Jul;32(14):2738-47. doi: 10.1128/MCB.00179-12. Epub 2012 May 14.

20.

Making ends meet: coordination between RNA 3'-end processing and transcription initiation.

Andersen PK, Jensen TH, Lykke-Andersen S.

Wiley Interdiscip Rev RNA. 2013 May-Jun;4(3):233-46. doi: 10.1002/wrna.1156. Epub 2013 Feb 28. Review.

PMID:
23450686

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