Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 73

1.

A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters.

Chen YR, Zheng Y, Liu B, Zhong S, Giovannoni J, Fei Z.

Plant Methods. 2012 Sep 20;8(1):41. doi: 10.1186/1746-4811-8-41.

2.

Simple and efficient synthesis of 5' pre-adenylated DNA using thermostable RNA ligase.

Zhelkovsky AM, McReynolds LA.

Nucleic Acids Res. 2011 Sep 1;39(17):e117. doi: 10.1093/nar/gkr544. Epub 2011 Jun 30.

3.

Efficient synthesis of stably adenylated DNA and RNA adapters for microRNA capture using T4 RNA ligase 1.

Song Y, Liu KJ, Wang TH.

Sci Rep. 2015 Oct 26;5:15620. doi: 10.1038/srep15620.

4.

Adenylylation of small RNA sequencing adapters using the TS2126 RNA ligase I.

Lama L, Ryan K.

RNA. 2016 Jan;22(1):155-61. doi: 10.1261/rna.054999.115. Epub 2015 Nov 13.

5.

Structural bias in T4 RNA ligase-mediated 3'-adapter ligation.

Zhuang F, Fuchs RT, Sun Z, Zheng Y, Robb GB.

Nucleic Acids Res. 2012 Apr;40(7):e54. doi: 10.1093/nar/gkr1263. Epub 2012 Jan 12.

6.

Small RNA Profiling by Next-Generation Sequencing Using High-Definition Adapters.

Billmeier M, Xu P.

Methods Mol Biol. 2017;1580:45-57. doi: 10.1007/978-1-4939-6866-4_4.

PMID:
28439825
7.

T4 RNA ligase 2 truncated active site mutants: improved tools for RNA analysis.

Viollet S, Fuchs RT, Munafo DB, Zhuang F, Robb GB.

BMC Biotechnol. 2011 Jul 1;11:72. doi: 10.1186/1472-6750-11-72.

8.

A High-Throughput Method for Illumina RNA-Seq Library Preparation.

Kumar R, Ichihashi Y, Kimura S, Chitwood DH, Headland LR, Peng J, Maloof JN, Sinha NR.

Front Plant Sci. 2012 Aug 28;3:202. doi: 10.3389/fpls.2012.00202. eCollection 2012.

9.

Method for improved Illumina sequencing library preparation using NuGEN Ovation RNA-Seq System.

Head SR, Komori HK, Hart GT, Shimashita J, Schaffer L, Salomon DR, Ordoukhanian PT.

Biotechniques. 2011 Mar;50(3):177-80. doi: 10.2144/000113613.

10.

Methods for small RNA preparation for digital gene expression profiling by next-generation sequencing.

Linsen SE, Cuppen E.

Methods Mol Biol. 2012;822:205-17. doi: 10.1007/978-1-61779-427-8_14.

PMID:
22144201
11.

A strand-specific library preparation protocol for RNA sequencing.

Borodina T, Adjaye J, Sultan M.

Methods Enzymol. 2011;500:79-98. doi: 10.1016/B978-0-12-385118-5.00005-0.

PMID:
21943893
12.

A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods.

Sultan M, Dökel S, Amstislavskiy V, Wuttig D, Sültmann H, Lehrach H, Yaspo ML.

Biochem Biophys Res Commun. 2012 Jun 15;422(4):643-6. doi: 10.1016/j.bbrc.2012.05.043. Epub 2012 May 15.

13.

Single-stranded DNA library preparation from highly degraded DNA using T4 DNA ligase.

Gansauge MT, Gerber T, Glocke I, Korlevic P, Lippik L, Nagel S, Riehl LM, Schmidt A, Meyer M.

Nucleic Acids Res. 2017 Jun 2;45(10):e79. doi: 10.1093/nar/gkx033.

14.

Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods.

Baran-Gale J, Kurtz CL, Erdos MR, Sison C, Young A, Fannin EE, Chines PS, Sethupathy P.

Front Genet. 2015 Dec 22;6:352. doi: 10.3389/fgene.2015.00352. eCollection 2015.

15.

Efficient RNA 5'-adenylation by T4 DNA ligase to facilitate practical applications.

Wang Y, Silverman SK.

RNA. 2006 Jun;12(6):1142-6. Epub 2006 Apr 17.

16.

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.

Lefrançois P, Euskirchen GM, Auerbach RK, Rozowsky J, Gibson T, Yellman CM, Gerstein M, Snyder M.

BMC Genomics. 2009 Jan 21;10:37. doi: 10.1186/1471-2164-10-37.

17.

Amplification-free library preparation for paired-end Illumina sequencing.

Kozarewa I, Turner DJ.

Methods Mol Biol. 2011;733:257-66. doi: 10.1007/978-1-61779-089-8_18.

PMID:
21431776
18.

Small RNA Library Preparation Method for Next-Generation Sequencing Using Chemical Modifications to Prevent Adapter Dimer Formation.

Shore S, Henderson JM, Lebedev A, Salcedo MP, Zon G, McCaffrey AP, Paul N, Hogrefe RI.

PLoS One. 2016 Nov 22;11(11):e0167009. doi: 10.1371/journal.pone.0167009. eCollection 2016.

19.

Fluorescence-, isotope- or biotin-labeling of the 5 '-end of single-stranded DNA/RNA using T4 RNA ligase.

Kinoshita Y, Nishigaki K, Husimi Y.

Nucleic Acids Res. 1997 Sep 15;25(18):3747-8.

20.

A method for generating highly multiplexed ChIP-seq libraries.

Ford E, Nikopoulou C, Kokkalis A, Thanos D.

BMC Res Notes. 2014 May 22;7:312. doi: 10.1186/1756-0500-7-312.

Supplemental Content

Support Center