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Items: 1 to 20 of 90

1.

Creating, documenting and sharing network models.

Crook SM, Bednar JA, Berger S, Cannon R, Davison AP, Djurfeldt M, Eppler J, Kriener B, Furber S, Graham B, Plesser HE, Schwabe L, Smith L, Steuber V, van Albada S.

Network. 2012;23(4):131-49. doi: 10.3109/0954898X.2012.722743. Epub 2012 Sep 20. Review.

PMID:
22994683
2.

Collaborative modelling: the future of computational neuroscience?

Davison AP.

Network. 2012;23(4):157-66. doi: 10.3109/0954898X.2012.718482. Epub 2012 Sep 20.

PMID:
22994605
3.

On the design of script languages for neural simulation.

Brette R.

Network. 2012;23(4):150-6. doi: 10.3109/0954898X.2012.716902. Epub 2012 Aug 16. Review.

PMID:
22897420
4.

Nexa: a scalable neural simulator with integrated analysis.

Benjaminsson S, Lansner A.

Network. 2012;23(4):254-71. doi: 10.3109/0954898X.2012.737087. Epub 2012 Nov 1.

PMID:
23116128
5.

Towards reproducible descriptions of neuronal network models.

Nordlie E, Gewaltig MO, Plesser HE.

PLoS Comput Biol. 2009 Aug;5(8):e1000456. doi: 10.1371/journal.pcbi.1000456. Epub 2009 Aug 7.

6.

Conedy: a scientific tool to investigate complex network dynamics.

Rothkegel A, Lehnertz K.

Chaos. 2012 Mar;22(1):013125. doi: 10.1063/1.3685527.

PMID:
22463001
7.

Designing a neural network simulator--the MENS modelling environment for network systems: I.

Schillen TB.

Comput Appl Biosci. 1991 Oct;7(4):417-30. Review.

PMID:
1747773
8.

DANA: distributed numerical and adaptive modelling framework.

Rougier NP, Fix J.

Network. 2012;23(4):237-53. doi: 10.3109/0954898X.2012.721573. Epub 2012 Sep 20.

PMID:
22994650
9.

Designing a neural network simulator--the MENS modelling environment for network systems: II.

Schillen TB.

Comput Appl Biosci. 1991 Oct;7(4):431-46. Review.

PMID:
1747774
10.

Behaviorally based modeling and computational approaches to neuroscience.

Reeke GN Jr, Sporns O.

Annu Rev Neurosci. 1993;16:597-623. Review.

PMID:
8460904
11.

NSDF: Neuroscience Simulation Data Format.

Ray S, Chintaluri C, Bhalla US, Wójcik DK.

Neuroinformatics. 2016 Apr;14(2):147-67. doi: 10.1007/s12021-015-9282-5.

12.

OptFlux: an open-source software platform for in silico metabolic engineering.

Rocha I, Maia P, Evangelista P, Vilaça P, Soares S, Pinto JP, Nielsen J, Patil KR, Ferreira EC, Rocha M.

BMC Syst Biol. 2010 Apr 19;4:45. doi: 10.1186/1752-0509-4-45.

13.

Comparison of GPU- and CPU-implementations of mean-firing rate neural networks on parallel hardware.

Dinkelbach HÜ, Vitay J, Beuth F, Hamker FH.

Network. 2012;23(4):212-36. doi: 10.3109/0954898X.2012.739292. Epub 2012 Nov 9.

PMID:
23140422
14.

Simulating spiking neural networks on GPU.

Brette R, Goodman DF.

Network. 2012;23(4):167-82. doi: 10.3109/0954898X.2012.730170. Epub 2012 Oct 15. Review.

PMID:
23067314
15.

Computational modeling of the dynamics of simple and complex cells in primary visual cortex.

Tao L, Cai D.

Sheng Li Xue Bao. 2011 Oct 25;63(5):401-11. Review.

16.

N2A: a computational tool for modeling from neurons to algorithms.

Rothganger F, Warrender CE, Trumbo D, Aimone JB.

Front Neural Circuits. 2014 Jan 24;8:1. doi: 10.3389/fncir.2014.00001. eCollection 2014.

17.

Minimum information requested in the annotation of biochemical models (MIRIAM).

Le Novère N, Finney A, Hucka M, Bhalla US, Campagne F, Collado-Vides J, Crampin EJ, Halstead M, Klipp E, Mendes P, Nielsen P, Sauro H, Shapiro B, Snoep JL, Spence HD, Wanner BL.

Nat Biotechnol. 2005 Dec;23(12):1509-15.

PMID:
16333295
18.

Advancing the boundaries of high-connectivity network simulation with distributed computing.

Morrison A, Mehring C, Geisel T, Aertsen AD, Diesmann M.

Neural Comput. 2005 Aug;17(8):1776-801.

PMID:
15969917
19.

Development and validation of MIX: comprehensive free software for meta-analysis of causal research data.

Bax L, Yu LM, Ikeda N, Tsuruta H, Moons KG.

BMC Med Res Methodol. 2006 Oct 13;6:50.

20.

ARACHNE: A neural-neuroglial network builder with remotely controlled parallel computing.

Aleksin SG, Zheng K, Rusakov DA, Savtchenko LP.

PLoS Comput Biol. 2017 Mar 31;13(3):e1005467. doi: 10.1371/journal.pcbi.1005467. eCollection 2017 Mar.

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