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Items: 1 to 20 of 126

1.

Inference on population histories by approximating infinite alleles diffusion.

Sirén J, Hanage WP, Corander J.

Mol Biol Evol. 2013 Feb;30(2):457-68. doi: 10.1093/molbev/mss227. Epub 2012 Sep 19.

2.

Efficient simulation and likelihood methods for non-neutral multi-allele models.

Joyce P, Genz A, Buzbas EO.

J Comput Biol. 2012 Jun;19(6):650-61. doi: 10.1089/cmb.2012.0033.

3.

Inference Under a Wright-Fisher Model Using an Accurate Beta Approximation.

Tataru P, Bataillon T, Hobolth A.

Genetics. 2015 Nov;201(3):1133-41. doi: 10.1534/genetics.115.179606. Epub 2015 Aug 26.

4.

Reconstructing population histories from single nucleotide polymorphism data.

Sirén J, Marttinen P, Corander J.

Mol Biol Evol. 2011 Jan;28(1):673-83. doi: 10.1093/molbev/msq236. Epub 2010 Sep 6.

PMID:
20819907
5.

Importance sampling for the infinite sites model.

Hobolth A, Uyenoyama MK, Wiuf C.

Stat Appl Genet Mol Biol. 2008;7(1):Article32. doi: 10.2202/1544-6115.1400. Epub 2008 Oct 30.

6.
7.

Population genetics inference for longitudinally-sampled mutants under strong selection.

Lacerda M, Seoighe C.

Genetics. 2014 Nov;198(3):1237-50. doi: 10.1534/genetics.114.167957. Epub 2014 Sep 10. Erratum in: Genetics. 2015 Mar;199(3):885.

8.

Statistical Inference in the Wright-Fisher Model Using Allele Frequency Data.

Tataru P, Simonsen M, Bataillon T, Hobolth A.

Syst Biol. 2017 Jan 1;66(1):e30-e46. doi: 10.1093/sysbio/syw056. Review.

PMID:
28173553
9.

The Effects of Population Size Histories on Estimates of Selection Coefficients from Time-Series Genetic Data.

Jewett EM, Steinrücken M, Song YS.

Mol Biol Evol. 2016 Nov;33(11):3002-3027. Epub 2016 Aug 22.

10.

Exact simulation of conditioned Wright-Fisher models.

Zhao L, Lascoux M, Waxman D.

J Theor Biol. 2014 Dec 21;363:419-26. doi: 10.1016/j.jtbi.2014.08.027. Epub 2014 Aug 28.

PMID:
25173081
11.

A modified Wright-Fisher model that incorporates Ne: A variant of the standard model with increased biological realism and reduced computational complexity.

Zhao L, Gossmann TI, Waxman D.

J Theor Biol. 2016 Mar 21;393:218-28. doi: 10.1016/j.jtbi.2016.01.002. Epub 2016 Jan 12.

PMID:
26796316
12.
13.

A review on Monte Carlo simulation methods as they apply to mutation and selection as formulated in Wright-Fisher models of evolutionary genetics.

Mode CJ, Gallop RJ.

Math Biosci. 2008 Feb;211(2):205-25. doi: 10.1016/j.mbs.2007.05.015. Epub 2007 Nov 28. Review.

PMID:
18190932
14.

Inference of population structure under a Dirichlet process model.

Huelsenbeck JP, Andolfatto P.

Genetics. 2007 Apr;175(4):1787-802. Epub 2007 Jan 21.

15.

Estimating population haplotype frequencies from pooled DNA samples using PHASE algorithm.

Pirinen M, Kulathinal S, Gasbarra D, Sillanpää MJ.

Genet Res (Camb). 2008 Dec;90(6):509-24. doi: 10.1017/S0016672308009877.

PMID:
19123969
16.

Correcting for ascertainment bias in the inference of population structure.

Guillot G, Foll M.

Bioinformatics. 2009 Feb 15;25(4):552-4. doi: 10.1093/bioinformatics/btn665. Epub 2009 Jan 9.

PMID:
19136550
17.

GENOMEPOP: a program to simulate genomes in populations.

Carvajal-Rodríguez A.

BMC Bioinformatics. 2008 Apr 30;9:223. doi: 10.1186/1471-2105-9-223.

18.

Probability distribution of haplotype frequencies under the two-locus Wright-Fisher model by diffusion approximation.

Boitard S, Loisel P.

Theor Popul Biol. 2007 May;71(3):380-91. Epub 2007 Jan 20.

PMID:
17316725
19.

Likelihoods and simulation methods for a class of nonneutral population genetics models.

Donnelly P, Nordborg M, Joyce P.

Genetics. 2001 Oct;159(2):853-67.

20.

Modelling evolutionary processes in small populations: not as ideal as you think.

Waples RS, Faulkner JR.

Mol Ecol. 2009 May;18(9):1834-47. doi: 10.1111/j.1365-294X.2009.04157.x. Epub 2009 Mar 31.

PMID:
19344355

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