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Items: 1 to 20 of 90

1.

Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification.

Malboeuf CM, Yang X, Charlebois P, Qu J, Berlin AM, Casali M, Pesko KN, Boutwell CL, DeVincenzo JP, Ebel GD, Allen TM, Zody MC, Henn MR, Levin JZ.

Nucleic Acids Res. 2013 Jan 7;41(1):e13. doi: 10.1093/nar/gks794. Epub 2012 Sep 8.

2.

Viral genome sequencing by random priming methods.

Djikeng A, Halpin R, Kuzmickas R, Depasse J, Feldblyum J, Sengamalay N, Afonso C, Zhang X, Anderson NG, Ghedin E, Spiro DJ.

BMC Genomics. 2008 Jan 7;9:5. doi: 10.1186/1471-2164-9-5.

3.

Improved strategies for sequence-independent amplification and sequencing of viral double-stranded RNA genomes.

Potgieter AC, Page NA, Liebenberg J, Wright IM, Landt O, van Dijk AA.

J Gen Virol. 2009 Jun;90(Pt 6):1423-32. doi: 10.1099/vir.0.009381-0. Epub 2009 Mar 4.

PMID:
19264638
4.

Rapid next-generation sequencing of dengue, EV-A71 and RSV-A viruses.

Baronti C, Piorkowski G, Leparc-Goffart I, de Lamballerie X, Dubot-Pérès A.

J Virol Methods. 2015 Dec 15;226:7-14. doi: 10.1016/j.jviromet.2015.09.004. Epub 2015 Sep 14.

PMID:
26376168
5.

Improved assembly procedure of viral RNA genomes amplified with Phi29 polymerase from new generation sequencing data.

Berthet N, Descorps-Declère S, Nkili-Meyong AA, Nakouné E, Gessain A, Manuguerra JC, Kazanji M.

Biol Res. 2016 Sep 7;49(1):39. doi: 10.1186/s40659-016-0099-y.

6.

Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes.

Gall A, Ferns B, Morris C, Watson S, Cotten M, Robinson M, Berry N, Pillay D, Kellam P.

J Clin Microbiol. 2012 Dec;50(12):3838-44. doi: 10.1128/JCM.01516-12. Epub 2012 Sep 19.

7.

Molecular cloning of full-length HIV-1 genomes directly from plasma viral RNA.

Fang G, Weiser B, Visosky AA, Townsend L, Burger H.

J Acquir Immune Defic Syndr Hum Retrovirol. 1996 Aug 1;12(4):352-7.

PMID:
8673543
8.
9.

RT-PCR amplification and cloning of large viral sequences.

Fan X, Di Bisceglie AM.

Methods Mol Biol. 2010;630:139-49. doi: 10.1007/978-1-60761-629-0_10.

PMID:
20300996
10.

[cDNAs cloning of SARS-CoV PUMC2 viral genome].

Fan Z, Tan XY, Yin B, Zou K, Wang T, Shen Y, Ni AP, Qin C, Yuan JG, Qiang BQ, Peng XZ.

Zhongguo Yi Xue Ke Xue Yuan Xue Bao. 2003 Oct;25(5):499-503. Chinese.

PMID:
14650144
11.

Phi29 polymerase based random amplification of viral RNA as an alternative to random RT-PCR.

Berthet N, Reinhardt AK, Leclercq I, van Ooyen S, Batéjat C, Dickinson P, Stamboliyska R, Old IG, Kong KA, Dacheux L, Bourhy H, Kennedy GC, Korfhage C, Cole ST, Manuguerra JC.

BMC Mol Biol. 2008 Sep 4;9:77. doi: 10.1186/1471-2199-9-77.

12.

Next generation sequencing of viral RNA genomes.

Marston DA, McElhinney LM, Ellis RJ, Horton DL, Wise EL, Leech SL, David D, de Lamballerie X, Fooks AR.

BMC Genomics. 2013 Jul 4;14:444. doi: 10.1186/1471-2164-14-444.

13.

An optimized methodology for whole genome sequencing of RNA respiratory viruses from nasopharyngeal aspirates.

Goya S, Valinotto LE, Tittarelli E, Rojo GL, Nabaes Jodar MS, Greninger AL, Zaiat JJ, Marti MA, Mistchenko AS, Viegas M.

PLoS One. 2018 Jun 25;13(6):e0199714. doi: 10.1371/journal.pone.0199714. eCollection 2018.

14.

Random amplification and pyrosequencing for identification of novel viral genome sequences.

Hang J, Forshey BM, Kochel TJ, Li T, Solórzano VF, Halsey ES, Kuschner RA.

J Biomol Tech. 2012 Apr;23(1):4-10. doi: 10.7171/jbt.12-2301-001.

15.

A simple method for the detection of measles virus genome by loop-mediated isothermal amplification (LAMP).

Fujino M, Yoshida N, Yamaguchi S, Hosaka N, Ota Y, Notomi T, Nakayama T.

J Med Virol. 2005 Jul;76(3):406-13.

PMID:
15902708
16.

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing.

Cornelissen M, Gall A, Vink M, Zorgdrager F, Binter Š, Edwards S, Jurriaans S, Bakker M, Ong SH, Gras L, van Sighem A, Bezemer D, de Wolf F, Reiss P, Kellam P, Berkhout B, Fraser C, van der Kuyl AC; BEEHIVE Consortium.

Virus Res. 2017 Jul 15;239:10-16. doi: 10.1016/j.virusres.2016.08.004. Epub 2016 Aug 4.

17.

Detection of respiratory syncytial virus genome by subgroups-A, B specific reverse transcription loop-mediated isothermal amplification (RT-LAMP).

Ushio M, Yui I, Yoshida N, Fujino M, Yonekawa T, Ota Y, Notomi T, Nakayama T.

J Med Virol. 2005 Sep;77(1):121-7.

PMID:
16032744
18.

A new approach to determining whole viral genomic sequences including termini using a single deep sequencing run.

Alfson KJ, Beadles MW, Griffiths A.

J Virol Methods. 2014 Nov;208:1-5. doi: 10.1016/j.jviromet.2014.07.023. Epub 2014 Jul 27.

PMID:
25075935
19.

Relative distribution of West Nile virus RNA in blood compartments: implications for blood donor nucleic acid amplification technology screening.

Lai L, Lee TH, Tobler L, Wen L, Shi P, Alexander J, Ewing H, Busch M.

Transfusion. 2012 Feb;52(2):447-54. doi: 10.1111/j.1537-2995.2011.03289.x. Epub 2011 Aug 9.

PMID:
21827506
20.

Viral Concentration and Amplification from Human Serum Samples Prior to Application of Next-Generation Sequencing Analysis.

Fernandez-Cassi X, Rusiñol M, Martínez-Puchol S.

Methods Mol Biol. 2018;1838:173-188. doi: 10.1007/978-1-4939-8682-8_13.

PMID:
30128997

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