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Items: 1 to 20 of 130

1.

Effects of codon sequence on the dynamics of genetic networks.

Potapov I, Mäkelä J, Yli-Harja O, Ribeiro AS.

J Theor Biol. 2012 Dec 21;315:17-25. doi: 10.1016/j.jtbi.2012.08.029. Epub 2012 Aug 31.

PMID:
22960571
2.

Stochastic sequence-level model of coupled transcription and translation in prokaryotes.

Mäkelä J, Lloyd-Price J, Yli-Harja O, Ribeiro AS.

BMC Bioinformatics. 2011 Apr 26;12:121. doi: 10.1186/1471-2105-12-121.

3.
4.

Ribosome-mediated translational pause and protein domain organization.

Thanaraj TA, Argos P.

Protein Sci. 1996 Aug;5(8):1594-612.

5.

Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli.

Stenström CM, Jin H, Major LL, Tate WP, Isaksson LA.

Gene. 2001 Jan 24;263(1-2):273-84.

PMID:
11223267
7.
8.
9.

Synonymous codon usage in Escherichia coli: selection for translational accuracy.

Stoletzki N, Eyre-Walker A.

Mol Biol Evol. 2007 Feb;24(2):374-81. Epub 2006 Nov 13.

PMID:
17101719
10.

Anatomy of Escherichia coli ribosome binding sites.

Shultzaberger RK, Bucheimer RE, Rudd KE, Schneider TD.

J Mol Biol. 2001 Oct 12;313(1):215-28.

PMID:
11601857
11.

Detecting sequence dependent transcriptional pauses from RNA and protein number time series.

Emmert-Streib F, Häkkinen A, Ribeiro AS.

BMC Bioinformatics. 2012 Jun 28;13:152. doi: 10.1186/1471-2105-13-152.

12.

Cooperative effects by the initiation codon and its flanking regions on translation initiation.

Stenström CM, Holmgren E, Isaksson LA.

Gene. 2001 Aug 8;273(2):259-65.

PMID:
11595172
13.

Effects of consecutive AGG codons on translation in Escherichia coli, demonstrated with a versatile codon test system.

Rosenberg AH, Goldman E, Dunn JJ, Studier FW, Zubay G.

J Bacteriol. 1993 Feb;175(3):716-22.

14.
15.

Codon influence on protein expression in E. coli correlates with mRNA levels.

Boël G, Letso R, Neely H, Price WN, Wong KH, Su M, Luff J, Valecha M, Everett JK, Acton TB, Xiao R, Montelione GT, Aalberts DP, Hunt JF.

Nature. 2016 Jan 21;529(7586):358-363. doi: 10.1038/nature16509. Epub 2016 Jan 13.

16.

[Sense codon in Escherichia coli are translated in context].

Shpaer EG.

Mol Biol (Mosk). 1986 Sep-Oct;20(5):1299-304. Russian.

PMID:
3534548
17.

Directed evolution study unveiling key sequence factors that affect translation efficiency in Escherichia coli.

Tsukuda M, Miyazaki K.

J Biosci Bioeng. 2013 Nov;116(5):540-5. doi: 10.1016/j.jbiosc.2013.05.013. Epub 2013 Jun 18.

PMID:
23790548
18.

Dynamics of a genetic toggle switch at the nucleotide and codon levels.

Potapov I, Lloyd-Price J, Yli-Harja O, Ribeiro AS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Sep;84(3 Pt 1):031903. Epub 2011 Sep 1. Erratum in: Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Dec;84(6 Pt 2):069903.

PMID:
22060399
20.

[Characteristics of the context shift in the frequency of synonymic codons in Escherichia coli].

Borodovskiĭ MIu, Shepelev VA, Aleksandrov AA.

Mol Biol (Mosk). 1988 May-Jun;22(3):767-79. Russian.

PMID:
3054498

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