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Items: 1 to 20 of 84

1.

What does our genome encode?

Stamatoyannopoulos JA.

Genome Res. 2012 Sep;22(9):1602-11. doi: 10.1101/gr.146506.112.

2.

The ENCODE project: implications for psychiatric genetics.

Kavanagh DH, Dwyer S, O'Donovan MC, Owen MJ.

Mol Psychiatry. 2013 May;18(5):540-2. doi: 10.1038/mp.2013.13. Epub 2013 Mar 12. Review.

PMID:
23478746
3.

The ENCODEdb portal: simplified access to ENCODE Consortium data.

Elnitski LL, Shah P, Moreland RT, Umayam L, Wolfsberg TG, Baxevanis AD.

Genome Res. 2007 Jun;17(6):954-9.

4.

Epigenetics, chromatin and genome organization: recent advances from the ENCODE project.

Siggens L, Ekwall K.

J Intern Med. 2014 Sep;276(3):201-14. doi: 10.1111/joim.12231. Epub 2014 Mar 27. Review.

5.

A decade of human genome project conclusion: Scientific diffusion about our genome knowledge.

Moraes F, Góes A.

Biochem Mol Biol Educ. 2016 May 6;44(3):215-23. doi: 10.1002/bmb.20952. Epub 2016 Mar 7. Review.

PMID:
26952518
6.

[ENCODE apophenia or a panglossian analysis of the human genome].

Casane D, Fumey J, Laurenti P.

Med Sci (Paris). 2015 Jun-Jul;31(6-7):680-6. doi: 10.1051/medsci/20153106023. Epub 2015 Jul 7. French.

7.

ENCODE whole-genome data in the UCSC Genome Browser.

Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, Karolchik D, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D620-5. doi: 10.1093/nar/gkp961. Epub 2009 Nov 17.

8.

What is a gene, post-ENCODE? History and updated definition.

Gerstein MB, Bruce C, Rozowsky JS, Zheng D, Du J, Korbel JO, Emanuelsson O, Zhang ZD, Weissman S, Snyder M.

Genome Res. 2007 Jun;17(6):669-81. Review.

9.

Extrapolating ENCODE data to the whole human genome.

Costantini M, Di Filippo M, Bernardi G.

Gene. 2008 Aug 1;419(1-2):66-9. doi: 10.1016/j.gene.2008.02.013. Epub 2008 Feb 21.

PMID:
18378099
10.

The ENCODE Project at UC Santa Cruz.

Thomas DJ, Rosenbloom KR, Clawson H, Hinrichs AS, Trumbower H, Raney BJ, Karolchik D, Barber GP, Harte RA, Hillman-Jackson J, Kuhn RM, Rhead BL, Smith KE, Thakkapallayil A, Zweig AS; ENCODE Project Consortium., Haussler D, Kent WJ.

Nucleic Acids Res. 2007 Jan;35(Database issue):D663-7. Epub 2006 Dec 13.

11.

ENCODE data at the ENCODE portal.

Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee BT, Rowe LD, Dreszer TR, Roe G, Podduturi NR, Tanaka F, Hong EL, Cherry JM.

Nucleic Acids Res. 2016 Jan 4;44(D1):D726-32. doi: 10.1093/nar/gkv1160. Epub 2015 Nov 2.

12.

MotifMap: integrative genome-wide maps of regulatory motif sites for model species.

Daily K, Patel VR, Rigor P, Xie X, Baldi P.

BMC Bioinformatics. 2011 Dec 30;12:495. doi: 10.1186/1471-2105-12-495.

13.

Detection and interpretation of genomic structural variation in mammals.

Hall IM, Quinlan AR.

Methods Mol Biol. 2012;838:225-48. doi: 10.1007/978-1-61779-507-7_11. Review.

PMID:
22228015
14.

The UCSC Cancer Genomics Browser: update 2011.

Sanborn JZ, Benz SC, Craft B, Szeto C, Kober KM, Meyer L, Vaske CJ, Goldman M, Smith KE, Kuhn RM, Karolchik D, Kent WJ, Stuart JM, Haussler D, Zhu J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D951-9. doi: 10.1093/nar/gkq1113. Epub 2010 Nov 8.

15.

Linking disease associations with regulatory information in the human genome.

Schaub MA, Boyle AP, Kundaje A, Batzoglou S, Snyder M.

Genome Res. 2012 Sep;22(9):1748-59. doi: 10.1101/gr.136127.111.

16.

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.

Zhang ZD, Paccanaro A, Fu Y, Weissman S, Weng Z, Chang J, Snyder M, Gerstein MB.

Genome Res. 2007 Jun;17(6):787-97.

17.

On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE.

Graur D, Zheng Y, Price N, Azevedo RB, Zufall RA, Elhaik E.

Genome Biol Evol. 2013;5(3):578-90. doi: 10.1093/gbe/evt028.

18.

Comparing genomes in terms of protein structure: surveys of a finite parts list.

Gerstein M, Hegyi H.

FEMS Microbiol Rev. 1998 Oct;22(4):277-304. Review.

19.

Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project.

Mu XJ, Lu ZJ, Kong Y, Lam HY, Gerstein MB.

Nucleic Acids Res. 2011 Sep 1;39(16):7058-76. doi: 10.1093/nar/gkr342. Epub 2011 May 19.

20.

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

Rosenbloom KR, Dreszer TR, Long JC, Malladi VS, Sloan CA, Raney BJ, Cline MS, Karolchik D, Barber GP, Clawson H, Diekhans M, Fujita PA, Goldman M, Gravell RC, Harte RA, Hinrichs AS, Kirkup VM, Kuhn RM, Learned K, Maddren M, Meyer LR, Pohl A, Rhead B, Wong MC, Zweig AS, Haussler D, Kent WJ.

Nucleic Acids Res. 2012 Jan;40(Database issue):D912-7. doi: 10.1093/nar/gkr1012. Epub 2011 Nov 9.

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