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Items: 1 to 20 of 107

1.

Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities.

Lim YW, Schmieder R, Haynes M, Willner D, Furlan M, Youle M, Abbott K, Edwards R, Evangelista J, Conrad D, Rohwer F.

J Cyst Fibros. 2013 Mar;12(2):154-64. doi: 10.1016/j.jcf.2012.07.009. Epub 2012 Aug 28.

2.

Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung.

Quinn RA, Lim YW, Maughan H, Conrad D, Rohwer F, Whiteson KL.

MBio. 2014 Mar 18;5(2):e00956-13. doi: 10.1128/mBio.00956-13.

3.

Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples.

Lim YW, Haynes M, Furlan M, Robertson CE, Harris JK, Rohwer F.

J Vis Exp. 2014 Dec 22;(94). doi: 10.3791/52117.

4.

Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals.

Willner D, Furlan M, Haynes M, Schmieder R, Angly FE, Silva J, Tammadoni S, Nosrat B, Conrad D, Rohwer F.

PLoS One. 2009 Oct 9;4(10):e7370. doi: 10.1371/journal.pone.0007370.

5.

Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details.

Feigelman R, Kahlert CR, Baty F, Rassouli F, Kleiner RL, Kohler P, Brutsche MH, von Mering C.

Microbiome. 2017 Feb 10;5(1):20. doi: 10.1186/s40168-017-0234-1.

6.

Deciphering the role of phage in the cystic fibrosis airway.

Willner D, Furlan M.

Virulence. 2010 Jul-Aug;1(4):309-13. doi: 10.4161/viru.1.4.12071.

PMID:
21178461
7.

Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities.

van der Gast CJ, Walker AW, Stressmann FA, Rogers GB, Scott P, Daniels TW, Carroll MP, Parkhill J, Bruce KD.

ISME J. 2011 May;5(5):780-91. doi: 10.1038/ismej.2010.175. Epub 2010 Dec 9.

8.

The airway microbiome in cystic fibrosis and implications for treatment.

Zemanick ET, Sagel SD, Harris JK.

Curr Opin Pediatr. 2011 Jun;23(3):319-24. doi: 10.1097/MOP.0b013e32834604f2. Review.

PMID:
21494150
9.

Spatial distribution of microbial communities in the cystic fibrosis lung.

Willner D, Haynes MR, Furlan M, Schmieder R, Lim YW, Rainey PB, Rohwer F, Conrad D.

ISME J. 2012 Feb;6(2):471-4. doi: 10.1038/ismej.2011.104. Epub 2011 Jul 28.

10.

Long-term cultivation-independent microbial diversity analysis demonstrates that bacterial communities infecting the adult cystic fibrosis lung show stability and resilience.

Stressmann FA, Rogers GB, van der Gast CJ, Marsh P, Vermeer LS, Carroll MP, Hoffman L, Daniels TW, Patel N, Forbes B, Bruce KD.

Thorax. 2012 Oct;67(10):867-73. doi: 10.1136/thoraxjnl-2011-200932. Epub 2012 Jun 15.

PMID:
22707521
11.

The metabolic footprint of the airway bacterial community in cystic fibrosis.

Narayanamurthy V, Sweetnam JM, Denner DR, Chen LW, Naureckas ET, Laxman B, White SR.

Microbiome. 2017 Jun 30;5(1):67. doi: 10.1186/s40168-017-0289-z.

12.

Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis.

Lim YW, Evangelista JS 3rd, Schmieder R, Bailey B, Haynes M, Furlan M, Maughan H, Edwards R, Rohwer F, Conrad D.

J Clin Microbiol. 2014 Feb;52(2):425-37. doi: 10.1128/JCM.02204-13. Epub 2013 Nov 20.

13.

Culture enriched molecular profiling of the cystic fibrosis airway microbiome.

Sibley CD, Grinwis ME, Field TR, Eshaghurshan CS, Faria MM, Dowd SE, Parkins MD, Rabin HR, Surette MG.

PLoS One. 2011;6(7):e22702. doi: 10.1371/journal.pone.0022702. Epub 2011 Jul 28.

14.

The cystic fibrosis lower airways microbial metagenome.

Moran Losada P, Chouvarine P, Dorda M, Hedtfeld S, Mielke S, Schulz A, Wiehlmann L, Tümmler B.

ERJ Open Res. 2016 May 9;2(2). pii: 00096-2015. eCollection 2016 Apr.

15.

A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients.

Sibley CD, Parkins MD, Rabin HR, Duan K, Norgaard JC, Surette MG.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):15070-5. doi: 10.1073/pnas.0804326105. Epub 2008 Sep 23.

16.

The polymicrobial nature of airway infections in cystic fibrosis: Cangene Gold Medal Lecture.

Sibley CD, Surette MG.

Can J Microbiol. 2011 Feb;57(2):69-77. doi: 10.1139/w10-105. Review.

PMID:
21326348
17.

Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation.

Whiteson KL, Meinardi S, Lim YW, Schmieder R, Maughan H, Quinn R, Blake DR, Conrad D, Rohwer F.

ISME J. 2014 Jun;8(6):1247-58. doi: 10.1038/ismej.2013.229. Epub 2014 Jan 9.

18.

Microbial ecology of the cystic fibrosis lung: does microflora type influence microbial loading?

Moore JE, Shaw A, Millar BC, Downey DG, Murphy PG, Elborn JS.

Br J Biomed Sci. 2005;62(4):175-8.

PMID:
16411377
19.

Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung.

Willner D, Haynes MR, Furlan M, Hanson N, Kirby B, Lim YW, Rainey PB, Schmieder R, Youle M, Conrad D, Rohwer F.

Am J Respir Cell Mol Biol. 2012 Feb;46(2):127-31. doi: 10.1165/rcmb.2011-0253OC. Epub 2011 Oct 6.

20.

Current concepts: host-pathogen interactions in cystic fibrosis airways disease.

Tang AC, Turvey SE, Alves MP, Regamey N, Tümmler B, Hartl D.

Eur Respir Rev. 2014 Sep;23(133):320-32. doi: 10.1183/09059180.00006113. Review.

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