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Items: 1 to 20 of 233

1.

miRNA_Targets: a database for miRNA target predictions in coding and non-coding regions of mRNAs.

Kumar A, Wong AK, Tizard ML, Moore RJ, Lefèvre C.

Genomics. 2012 Dec;100(6):352-6. doi: 10.1016/j.ygeno.2012.08.006. Epub 2012 Aug 25.

2.
3.

Computational analysis of microRNA targets in Caenorhabditis elegans.

Watanabe Y, Yachie N, Numata K, Saito R, Kanai A, Tomita M.

Gene. 2006 Jan 3;365:2-10. Epub 2005 Dec 13.

PMID:
16356665
4.

miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes.

Dweep H, Sticht C, Pandey P, Gretz N.

J Biomed Inform. 2011 Oct;44(5):839-47. doi: 10.1016/j.jbi.2011.05.002. Epub 2011 May 14.

5.

A genome-wide map of conserved microRNA targets in C. elegans.

Lall S, Grün D, Krek A, Chen K, Wang YL, Dewey CN, Sood P, Colombo T, Bray N, Macmenamin P, Kao HL, Gunsalus KC, Pachter L, Piano F, Rajewsky N.

Curr Biol. 2006 Mar 7;16(5):460-71. Epub 2006 Feb 2.

6.

Prediction of microRNA targets in Caenorhabditis elegans using a self-organizing map.

Heikkinen L, Kolehmainen M, Wong G.

Bioinformatics. 2011 May 1;27(9):1247-54. doi: 10.1093/bioinformatics/btr144. Epub 2011 Mar 21.

PMID:
21422073
7.

Fast and effective prediction of microRNA/target duplexes.

Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R.

RNA. 2004 Oct;10(10):1507-17.

8.

Interactive exploration of RNA22 microRNA target predictions.

Loher P, Rigoutsos I.

Bioinformatics. 2012 Dec 15;28(24):3322-3. doi: 10.1093/bioinformatics/bts615. Epub 2012 Oct 16.

PMID:
23074262
9.

Prediction of human microRNA targets.

John B, Sander C, Marks DS.

Methods Mol Biol. 2006;342:101-13. Review.

PMID:
16957370
10.

MicroRNA binding sites in C. elegans 3' UTRs.

Liu C, Rennie WA, Mallick B, Kanoria S, Long D, Wolenc A, Carmack CS, Ding Y.

RNA Biol. 2014;11(6):693-701. Epub 2014 Apr 25.

11.

MiRTif: a support vector machine-based microRNA target interaction filter.

Yang Y, Wang YP, Li KB.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S4. doi: 10.1186/1471-2105-9-S12-S4.

12.

starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.

Yang JH, Li JH, Shao P, Zhou H, Chen YQ, Qu LH.

Nucleic Acids Res. 2011 Jan;39(Database issue):D202-9. doi: 10.1093/nar/gkq1056. Epub 2010 Oct 30.

13.

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.

Hsu PW, Huang HD, Hsu SD, Lin LZ, Tsou AP, Tseng CP, Stadler PF, Washietl S, Hofacker IL.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D135-9.

14.

Aberrant allele frequencies of the SNPs located in microRNA target sites are potentially associated with human cancers.

Yu Z, Li Z, Jolicoeur N, Zhang L, Fortin Y, Wang E, Wu M, Shen SH.

Nucleic Acids Res. 2007;35(13):4535-41. Epub 2007 Jun 21.

15.

Computational identification of novel microRNAs and targets in Brassica napus.

Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM.

FEBS Lett. 2007 Apr 3;581(7):1464-74. Epub 2007 Mar 8.

16.

A wide repertoire of miRNA binding sites: prediction and functional implications.

Elefant N, Altuvia Y, Margalit H.

Bioinformatics. 2011 Nov 15;27(22):3093-101. doi: 10.1093/bioinformatics/btr534. Epub 2011 Sep 27.

PMID:
21953484
17.

MtiBase: a database for decoding microRNA target sites located within CDS and 5'UTR regions from CLIP-Seq and expression profile datasets.

Guo ZW, Xie C, Yang JR, Li JH, Yang JH, Zheng L.

Database (Oxford). 2015;2015. pii: bav102. doi: 10.1093/database/bav102.

18.

CID-miRNA: a web server for prediction of novel miRNA precursors in human genome.

Tyagi S, Vaz C, Gupta V, Bhatia R, Maheshwari S, Srinivasan A, Bhattacharya A.

Biochem Biophys Res Commun. 2008 Aug 8;372(4):831-4. doi: 10.1016/j.bbrc.2008.05.134. Epub 2008 Jun 2.

PMID:
18522801
19.

miRU: an automated plant miRNA target prediction server.

Zhang Y.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W701-4.

20.

RepTar: a database of predicted cellular targets of host and viral miRNAs.

Elefant N, Berger A, Shein H, Hofree M, Margalit H, Altuvia Y.

Nucleic Acids Res. 2011 Jan;39(Database issue):D188-94. doi: 10.1093/nar/gkq1233. Epub 2010 Dec 10.

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