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Items: 1 to 20 of 88

1.

Structural considerations for chromatin state models with transcription as a functional readout.

Chen H, Monte E, Parvatiyar MS, Rosa-Garrido M, Franklin S, Vondriska TM.

FEBS Lett. 2012 Oct 19;586(20):3548-54. doi: 10.1016/j.febslet.2012.08.018. Epub 2012 Aug 31.

2.

Global survey of chromatin accessibility using DNA microarrays.

Weil MR, Widlak P, Minna JD, Garner HR.

Genome Res. 2004 Jul;14(7):1374-81.

3.

Chromatin remodelling and the interaction between enhancers and promoters in the beta-globin locus.

Dean A.

Brief Funct Genomic Proteomic. 2004 Feb;2(4):344-54. Review.

PMID:
15163369
4.

Rules and regulation in the primary structure of chromatin.

Rando OJ, Ahmad K.

Curr Opin Cell Biol. 2007 Jun;19(3):250-6. Epub 2007 Apr 26. Review.

PMID:
17466507
5.

The relationship between higher-order chromatin structure and transcription.

Gilbert N, Bickmore WA.

Biochem Soc Symp. 2006;(73):59-66.

PMID:
16626287
6.

Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection.

Karnani N, Taylor CM, Malhotra A, Dutta A.

Mol Biol Cell. 2010 Feb 1;21(3):393-404. doi: 10.1091/mbc.E09-08-0707. Epub 2009 Dec 2.

7.

Chromatin: mysteries solved?

Peterson CL.

Biochem Cell Biol. 2001;79(3):219-25. Review.

PMID:
11467736
8.

Transcription-dependent generation of a specialized chromatin structure at the TCRβ locus.

Zacarías-Cabeza J, Belhocine M, Vanhille L, Cauchy P, Koch F, Pekowska A, Fenouil R, Bergon A, Gut M, Gut I, Eick D, Imbert J, Ferrier P, Andrau JC, Spicuglia S.

J Immunol. 2015 Apr 1;194(7):3432-43. doi: 10.4049/jimmunol.1400789. Epub 2015 Mar 2.

9.

Chromatin higher-order structures and gene regulation.

Li G, Reinberg D.

Curr Opin Genet Dev. 2011 Apr;21(2):175-86. doi: 10.1016/j.gde.2011.01.022. Epub 2011 Feb 20. Review.

10.

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages.

Lan X, Witt H, Katsumura K, Ye Z, Wang Q, Bresnick EH, Farnham PJ, Jin VX.

Nucleic Acids Res. 2012 Sep;40(16):7690-704. Epub 2012 Jun 6.

11.

Chromatin remodeling and transcription.

Hirose S.

J Biochem. 1998 Dec 1;124(6):1060-4. Review.

12.

The physical size of transcription factors is key to transcriptional regulation in chromatin domains.

Maeshima K, Kaizu K, Tamura S, Nozaki T, Kokubo T, Takahashi K.

J Phys Condens Matter. 2015 Feb 18;27(6):064116. doi: 10.1088/0953-8984/27/6/064116. Epub 2015 Jan 7.

PMID:
25563431
13.

Chromatin control of gene expression: the simplest model.

Lindsay S.

Biophys J. 2007 Feb 15;92(4):1113. Epub 2006 Dec 1. No abstract available.

14.

Chromatin, DNA structure and alternative splicing.

Nieto Moreno N, Giono LE, Cambindo Botto AE, Muñoz MJ, Kornblihtt AR.

FEBS Lett. 2015 Nov 14;589(22):3370-8. doi: 10.1016/j.febslet.2015.08.002. Epub 2015 Aug 18. Review.

15.

Thermodynamic models of combinatorial gene regulation by distant enhancers.

Narula J, Igoshin OA.

IET Syst Biol. 2010 Nov;4(6):393-408. doi: 10.1049/iet-syb.2010.0010.

PMID:
21073238
16.
17.

Modulated contact frequencies at gene-rich loci support a statistical helix model for mammalian chromatin organization.

Court F, Miro J, Braem C, Lelay-Taha MN, Brisebarre A, Atger F, Gostan T, Weber M, Cathala G, Forné T.

Genome Biol. 2011;12(5):R42. doi: 10.1186/gb-2011-12-5-r42. Epub 2011 May 10.

18.

Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels.

Tippmann SC, Ivanek R, Gaidatzis D, Schöler A, Hoerner L, van Nimwegen E, Stadler PF, Stadler MB, Schübeler D.

Mol Syst Biol. 2012 Jul 17;8:593. doi: 10.1038/msb.2012.23.

19.

Discovery and characterization of chromatin states for systematic annotation of the human genome.

Ernst J, Kellis M.

Nat Biotechnol. 2010 Aug;28(8):817-25. doi: 10.1038/nbt.1662. Epub 2010 Jul 25.

20.

Combined chromatin and expression analysis reveals specific regulatory mechanisms within cytokine genes in the macrophage early immune response.

Iglesias MJ, Reilly SJ, Emanuelsson O, Sennblad B, Pirmoradian Najafabadi M, Folkersen L, Mälarstig A, Lagergren J, Eriksson P, Hamsten A, Odeberg J.

PLoS One. 2012;7(2):e32306. doi: 10.1371/journal.pone.0032306. Epub 2012 Feb 27. Erratum in: PLoS One. 2012;7(4): doi/10.1371/annotation/689ae222-9eb1-4f80-8ebe-6b80e8ad45ce. Jesus Iglesias, Maria [corrected to Iglesias, Maria Jesus].

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