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Items: 1 to 20 of 121

1.

A high-coverage genome sequence from an archaic Denisovan individual.

Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, Tandon A, Siebauer M, Green RE, Bryc K, Briggs AW, Stenzel U, Dabney J, Shendure J, Kitzman J, Hammer MF, Shunkov MV, Derevianko AP, Patterson N, Andrés AM, Eichler EE, Slatkin M, Reich D, Kelso J, Pääbo S.

Science. 2012 Oct 12;338(6104):222-6. doi: 10.1126/science.1224344. Epub 2012 Aug 30.

2.

Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals.

Vernot B, Tucci S, Kelso J, Schraiber JG, Wolf AB, Gittelman RM, Dannemann M, Grote S, McCoy RC, Norton H, Scheinfeldt LB, Merriwether DA, Koki G, Friedlaender JS, Wakefield J, Pääbo S, Akey JM.

Science. 2016 Apr 8;352(6282):235-9. doi: 10.1126/science.aad9416. Epub 2016 Mar 17.

3.

Early history of Neanderthals and Denisovans.

Rogers AR, Bohlender RJ, Huff CD.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9859-9863. doi: 10.1073/pnas.1706426114. Epub 2017 Aug 7.

4.

Chromosomal Rearrangements as Barriers to Genetic Homogenization between Archaic and Modern Humans.

Rogers RL.

Mol Biol Evol. 2015 Dec;32(12):3064-78. doi: 10.1093/molbev/msv204. Epub 2015 Sep 23.

5.

Insights into hominin phenotypic and dietary evolution from ancient DNA sequence data.

Perry GH, Kistler L, Kelaita MA, Sams AJ.

J Hum Evol. 2015 Feb;79:55-63. doi: 10.1016/j.jhevol.2014.10.018. Epub 2015 Jan 3.

PMID:
25563409
6.

Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture.

Browning SR, Browning BL, Zhou Y, Tucci S, Akey JM.

Cell. 2018 Mar 22;173(1):53-61.e9. doi: 10.1016/j.cell.2018.02.031. Epub 2018 Mar 15.

7.

Detecting archaic introgression using an unadmixed outgroup.

Skov L, Hui R, Shchur V, Hobolth A, Scally A, Schierup MH, Durbin R.

PLoS Genet. 2018 Sep 18;14(9):e1007641. doi: 10.1371/journal.pgen.1007641. eCollection 2018 Sep.

8.

The complete genome sequence of a Neanderthal from the Altai Mountains.

Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, Kuhlwilm M, Lachmann M, Meyer M, Ongyerth M, Siebauer M, Theunert C, Tandon A, Moorjani P, Pickrell J, Mullikin JC, Vohr SH, Green RE, Hellmann I, Johnson PL, Blanche H, Cann H, Kitzman JO, Shendure J, Eichler EE, Lein ES, Bakken TE, Golovanova LV, Doronichev VB, Shunkov MV, Derevianko AP, Viola B, Slatkin M, Reich D, Kelso J, Pääbo S.

Nature. 2014 Jan 2;505(7481):43-9. doi: 10.1038/nature12886. Epub 2013 Dec 18.

9.

Archaic human genomics.

Disotell TR.

Am J Phys Anthropol. 2012;149 Suppl 55:24-39. doi: 10.1002/ajpa.22159. Epub 2012 Nov 2. Review.

PMID:
23124308
10.

The Mitonuclear Dimension of Neanderthal and Denisovan Ancestry in Modern Human Genomes.

Sharbrough J, Havird JC, Noe GR, Warren JM, Sloan DB.

Genome Biol Evol. 2017 Jun 1;9(6):1567-1581. doi: 10.1093/gbe/evx114.

11.

The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans.

Sankararaman S, Mallick S, Patterson N, Reich D.

Curr Biol. 2016 May 9;26(9):1241-7. doi: 10.1016/j.cub.2016.03.037. Epub 2016 Mar 28.

12.

Archaic Hominin Admixture Facilitated Adaptation to Out-of-Africa Environments.

Gittelman RM, Schraiber JG, Vernot B, Mikacenic C, Wurfel MM, Akey JM.

Curr Biol. 2016 Dec 19;26(24):3375-3382. doi: 10.1016/j.cub.2016.10.041. Epub 2016 Nov 10.

13.

The genome of the offspring of a Neanderthal mother and a Denisovan father.

Slon V, Mafessoni F, Vernot B, de Filippo C, Grote S, Viola B, Hajdinjak M, Peyrégne S, Nagel S, Brown S, Douka K, Higham T, Kozlikin MB, Shunkov MV, Derevianko AP, Kelso J, Meyer M, Prüfer K, Pääbo S.

Nature. 2018 Sep;561(7721):113-116. doi: 10.1038/s41586-018-0455-x. Epub 2018 Aug 22.

14.

The phenotypic legacy of admixture between modern humans and Neandertals.

Simonti CN, Vernot B, Bastarache L, Bottinger E, Carrell DS, Chisholm RL, Crosslin DR, Hebbring SJ, Jarvik GP, Kullo IJ, Li R, Pathak J, Ritchie MD, Roden DM, Verma SS, Tromp G, Prato JD, Bush WS, Akey JM, Denny JC, Capra JA.

Science. 2016 Feb 12;351(6274):737-41. doi: 10.1126/science.aad2149.

15.

Motifome comparison between modern human, Neanderthal and Denisovan.

Cserhati MF, Mooter ME, Peterson L, Wicks B, Xiao P, Pauley M, Guda C.

BMC Genomics. 2018 Jun 18;19(1):472. doi: 10.1186/s12864-018-4710-1.

16.

Resurrecting surviving Neandertal lineages from modern human genomes.

Vernot B, Akey JM.

Science. 2014 Feb 28;343(6174):1017-21. doi: 10.1126/science.1245938. Epub 2014 Jan 29.

PMID:
24476670
17.

Nuclear and mitochondrial DNA sequences from two Denisovan individuals.

Sawyer S, Renaud G, Viola B, Hublin JJ, Gansauge MT, Shunkov MV, Derevianko AP, Prüfer K, Kelso J, Pääbo S.

Proc Natl Acad Sci U S A. 2015 Dec 22;112(51):15696-700. doi: 10.1073/pnas.1519905112. Epub 2015 Nov 16.

18.

Paleogenomics of archaic hominins.

Lalueza-Fox C, Gilbert MT.

Curr Biol. 2011 Dec 20;21(24):R1002-9. doi: 10.1016/j.cub.2011.11.021.

19.

Reconstructing the DNA methylation maps of the Neandertal and the Denisovan.

Gokhman D, Lavi E, Prüfer K, Fraga MF, Riancho JA, Kelso J, Pääbo S, Meshorer E, Carmel L.

Science. 2014 May 2;344(6183):523-7. doi: 10.1126/science.1250368. Epub 2014 Apr 17.

20.

Immune Gene Diversity in Archaic and Present-day Humans.

Reher D, Key FM, Andrés AM, Kelso J.

Genome Biol Evol. 2019 Jan 1;11(1):232-241. doi: 10.1093/gbe/evy271.

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