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Structures of Pup ligase PafA and depupylase Dop from the prokaryotic ubiquitin-like modification pathway.

Özcelik D, Barandun J, Schmitz N, Sutter M, Guth E, Damberger FF, Allain FH, Ban N, Weber-Ban E.

Nat Commun. 2012;3:1014. doi: 10.1038/ncomms2009.


Dop functions as a depupylase in the prokaryotic ubiquitin-like modification pathway.

Imkamp F, Striebel F, Sutter M, Ozcelik D, Zimmermann N, Sander P, Weber-Ban E.

EMBO Rep. 2010 Oct;11(10):791-7. doi: 10.1038/embor.2010.119.


The Mechanism of Mycobacterium smegmatis PafA Self-Pupylation.

Chen X, Li C, Wang L, Liu Y, Li C, Zhang J.

PLoS One. 2016 Mar 8;11(3):e0151021. doi: 10.1371/journal.pone.0151021.


Molecular analysis of the prokaryotic ubiquitin-like protein (Pup) conjugation pathway in Mycobacterium tuberculosis.

Cerda-Maira FA, Pearce MJ, Fuortes M, Bishai WR, Hubbard SR, Darwin KH.

Mol Microbiol. 2010 Sep;77(5):1123-35. doi: 10.1111/j.1365-2958.2010.07276.x.


Posttranslational regulation of coordinated enzyme activities in the Pup-proteasome system.

Elharar Y, Roth Z, Hecht N, Rotkopf R, Khalaila I, Gur E.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):E1605-14. doi: 10.1073/pnas.1525185113.


Deletion of dop in Mycobacterium smegmatis abolishes pupylation of protein substrates in vivo.

Imkamp F, Rosenberger T, Striebel F, Keller PM, Amstutz B, Sander P, Weber-Ban E.

Mol Microbiol. 2010 Feb;75(3):744-54. doi: 10.1111/j.1365-2958.2009.07013.x.


Allosteric transitions direct protein tagging by PafA, the prokaryotic ubiquitin-like protein (Pup) ligase.

Ofer N, Forer N, Korman M, Vishkautzan M, Khalaila I, Gur E.

J Biol Chem. 2013 Apr 19;288(16):11287-93. doi: 10.1074/jbc.M112.435842.


Activity of the mycobacterial proteasomal ATPase Mpa is reversibly regulated by pupylation.

Delley CL, Striebel F, Heydenreich FM, Özcelik D, Weber-Ban E.

J Biol Chem. 2012 Mar 9;287(11):7907-14. doi: 10.1074/jbc.M111.331124.


Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination.

Iyer LM, Burroughs AM, Aravind L.

Biol Direct. 2008 Nov 3;3:45. doi: 10.1186/1745-6150-3-45.


Genetic and Proteomic Analyses of Pupylation in Streptomyces coelicolor.

Compton CL, Fernandopulle MS, Nagari RT, Sello JK.

J Bacteriol. 2015 Sep;197(17):2747-53. doi: 10.1128/JB.00302-15.


An Extended Loop of the Pup Ligase, PafA, Mediates Interaction with Protein Targets.

Regev O, Korman M, Hecht N, Roth Z, Forer N, Zarivach R, Gur E.

J Mol Biol. 2016 Oct 9;428(20):4143-4153. doi: 10.1016/j.jmb.2016.07.021.


A kinetic model for the prevalence of mono- over poly-pupylation.

Regev O, Roth Z, Korman M, Khalaila I, Gur E.

FEBS J. 2015 Nov;282(21):4176-86. doi: 10.1111/febs.13413.


"Depupylation" of prokaryotic ubiquitin-like protein from mycobacterial proteasome substrates.

Burns KE, Cerda-Maira FA, Wang T, Li H, Bishai WR, Darwin KH.

Mol Cell. 2010 Sep 10;39(5):821-7. doi: 10.1016/j.molcel.2010.07.019.


Crystal structure of the complex between prokaryotic ubiquitin-like protein and its ligase PafA.

Barandun J, Delley CL, Ban N, Weber-Ban E.

J Am Chem Soc. 2013 May 8;135(18):6794-7. doi: 10.1021/ja4024012.


Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes.

Striebel F, Imkamp F, Sutter M, Steiner M, Mamedov A, Weber-Ban E.

Nat Struct Mol Biol. 2009 Jun;16(6):647-51. doi: 10.1038/nsmb.1597.


Mycobacterium tuberculosis prokaryotic ubiquitin-like protein-deconjugating enzyme is an unusual aspartate amidase.

Burns KE, McAllister FE, Schwerdtfeger C, Mintseris J, Cerda-Maira F, Noens EE, Wilmanns M, Hubbard SR, Melandri F, Ovaa H, Gygi SP, Darwin KH.

J Biol Chem. 2012 Oct 26;287(44):37522-9. doi: 10.1074/jbc.M112.384784.


Pupylation as a signal for proteasomal degradation in bacteria.

Striebel F, Imkamp F, Özcelik D, Weber-Ban E.

Biochim Biophys Acta. 2014 Jan;1843(1):103-13. doi: 10.1016/j.bbamcr.2013.03.022. Review.


The pupylation pathway and its role in mycobacteria.

Barandun J, Delley CL, Weber-Ban E.

BMC Biol. 2012 Nov 30;10:95. doi: 10.1186/1741-7007-10-95. Review.


Rhodococcus prokaryotic ubiquitin-like protein (Pup) is degraded by deaminase of pup (Dop).

Yun HY, Tamura N, Tamura T.

Biosci Biotechnol Biochem. 2012;76(10):1959-66.


Mycobacterial ubiquitin-like protein ligase PafA follows a two-step reaction pathway with a phosphorylated pup intermediate.

Guth E, Thommen M, Weber-Ban E.

J Biol Chem. 2011 Feb 11;286(6):4412-9. doi: 10.1074/jbc.M110.189282.

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