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Items: 1 to 20 of 163

1.

Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython.

Talevich E, Invergo BM, Cock PJ, Chapman BA.

BMC Bioinformatics. 2012 Aug 21;13:209. doi: 10.1186/1471-2105-13-209.

2.

BIO::Phylo-phyloinformatic analysis using perl.

Vos RA, Caravas J, Hartmann K, Jensen MA, Miller C.

BMC Bioinformatics. 2011 Feb 27;12:63. doi: 10.1186/1471-2105-12-63.

3.

Biopython: freely available Python tools for computational molecular biology and bioinformatics.

Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ.

Bioinformatics. 2009 Jun 1;25(11):1422-3. doi: 10.1093/bioinformatics/btp163. Epub 2009 Mar 20.

4.

ETE: a python Environment for Tree Exploration.

Huerta-Cepas J, Dopazo J, Gabaldón T.

BMC Bioinformatics. 2010 Jan 13;11:24. doi: 10.1186/1471-2105-11-24.

5.

Unipro UGENE: a unified bioinformatics toolkit.

Okonechnikov K, Golosova O, Fursov M; UGENE team.

Bioinformatics. 2012 Apr 15;28(8):1166-7. doi: 10.1093/bioinformatics/bts091. Epub 2012 Feb 24.

6.

jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web.

Smits SA, Ouverney CC.

PLoS One. 2010 Aug 18;5(8):e12267. doi: 10.1371/journal.pone.0012267.

7.

DendroPy: a Python library for phylogenetic computing.

Sukumaran J, Holder MT.

Bioinformatics. 2010 Jun 15;26(12):1569-71. doi: 10.1093/bioinformatics/btq228. Epub 2010 Apr 25.

8.

A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines.

Cieślik M, Mura C.

BMC Bioinformatics. 2011 Feb 25;12:61. doi: 10.1186/1471-2105-12-61.

9.

phyloXML: XML for evolutionary biology and comparative genomics.

Han MV, Zmasek CM.

BMC Bioinformatics. 2009 Oct 27;10:356. doi: 10.1186/1471-2105-10-356.

10.

PDB file parser and structure class implemented in Python.

Hamelryck T, Manderick B.

Bioinformatics. 2003 Nov 22;19(17):2308-10.

11.

MAPI: towards the integrated exploitation of bioinformatics Web Services.

Ramirez S, Karlsson J, Trelles O.

BMC Bioinformatics. 2011 Oct 27;12:419. doi: 10.1186/1471-2105-12-419.

12.

XML schemas for common bioinformatic data types and their application in workflow systems.

Seibel PN, Krüger J, Hartmeier S, Schwarzer K, Löwenthal K, Mersch H, Dandekar T, Giegerich R.

BMC Bioinformatics. 2006 Nov 6;7:490.

13.

The Bio-Community Perl toolkit for microbial ecology.

Angly FE, Fields CJ, Tyson GW.

Bioinformatics. 2014 Jul 1;30(13):1926-7. doi: 10.1093/bioinformatics/btu130. Epub 2014 Mar 10.

14.

Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies.

Prins P, Goto N, Yates A, Gautier L, Willis S, Fields C, Katayama T.

Methods Mol Biol. 2012;856:513-27. doi: 10.1007/978-1-61779-585-5_21.

PMID:
22399473
15.

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics.

Dutheil J, Gaillard S, Bazin E, Glémin S, Ranwez V, Galtier N, Belkhir K.

BMC Bioinformatics. 2006 Apr 4;7:188.

16.

Utility library for structural bioinformatics.

Gront D, Kolinski A.

Bioinformatics. 2008 Feb 15;24(4):584-5. doi: 10.1093/bioinformatics/btm627. Epub 2008 Jan 28.

17.

Workflows for microarray data processing in the Kepler environment.

Stropp T, McPhillips T, Ludäscher B, Bieda M.

BMC Bioinformatics. 2012 May 17;13:102. doi: 10.1186/1471-2105-13-102.

18.

BioXSD: the common data-exchange format for everyday bioinformatics web services.

Kalas M, Puntervoll P, Joseph A, Bartaseviciūte E, Töpfer A, Venkataraman P, Pettifer S, Bryne JC, Ison J, Blanchet C, Rapacki K, Jonassen I.

Bioinformatics. 2010 Sep 15;26(18):i540-6. doi: 10.1093/bioinformatics/btq391.

19.

Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data.

Hladish T, Gopalan V, Liang C, Qiu W, Yang P, Stoltzfus A.

BMC Bioinformatics. 2007 Jun 8;8:191.

20.

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.

Swertz MA, Dijkstra M, Adamusiak T, van der Velde JK, Kanterakis A, Roos ET, Lops J, Thorisson GA, Arends D, Byelas G, Muilu J, Brookes AJ, de Brock EO, Jansen RC, Parkinson H.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S12. doi: 10.1186/1471-2105-11-S12-S12.

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