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Items: 1 to 20 of 117

1.

HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions.

Bovolenta LA, Acencio ML, Lemke N.

BMC Genomics. 2012 Aug 17;13:405. doi: 10.1186/1471-2164-13-405.

PMID:
22900683
2.

ORTI: An Open-Access Repository of Transcriptional Interactions for Interrogating Mammalian Gene Expression Data.

Vafaee F, Krycer JR, Ma X, Burykin T, James DE, Kuncic Z.

PLoS One. 2016 Oct 10;11(10):e0164535. doi: 10.1371/journal.pone.0164535.

PMID:
27723773
3.

P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.

PMID:
23153078
4.

TOBFAC: the database of tobacco transcription factors.

Rushton PJ, Bokowiec MT, Laudeman TW, Brannock JF, Chen X, Timko MP.

BMC Bioinformatics. 2008 Jan 25;9:53. doi: 10.1186/1471-2105-9-53.

PMID:
18221524
5.

TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.

Lepoivre C, Bergon A, Lopez F, Perumal NB, Nguyen C, Imbert J, Puthier D.

BMC Bioinformatics. 2012 Jan 31;13:19. doi: 10.1186/1471-2105-13-19.

PMID:
22292669
6.

CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse.

Friard O, Re A, Taverna D, De Bortoli M, CorĂ¡ D.

BMC Bioinformatics. 2010 Aug 23;11:435. doi: 10.1186/1471-2105-11-435.

PMID:
20731828
7.

TransmiR: a transcription factor-microRNA regulation database.

Wang J, Lu M, Qiu C, Cui Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D119-22. doi: 10.1093/nar/gkp803.

PMID:
19786497
8.

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

PMID:
16603075
9.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

PMID:
18426580
10.

RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse.

Liu ZP, Wu C, Miao H, Wu H.

Database (Oxford). 2015 Sep 30;2015. pii: bav095. doi: 10.1093/database/bav095.

PMID:
26424082
11.

YTRP: a repository for yeast transcriptional regulatory pathways.

Yang TH, Wang CC, Wang YC, Wu WS.

Database (Oxford). 2014 Mar 7;2014:bau014. doi: 10.1093/database/bau014.

PMID:
24608172
12.

DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions.

Yu J, Pacifico S, Liu G, Finley RL Jr.

BMC Genomics. 2008 Oct 7;9:461. doi: 10.1186/1471-2164-9-461.

PMID:
18840285
13.

Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.

PMID:
17971223
14.

cTFbase: a database for comparative genomics of transcription factors in cyanobacteria.

Wu J, Zhao F, Wang S, Deng G, Wang J, Bai J, Lu J, Qu J, Bao Q.

BMC Genomics. 2007 Apr 18;8:104.

PMID:
17439663
15.

CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks.

Baumbach J.

BMC Bioinformatics. 2007 Nov 6;8:429.

PMID:
17986320
16.

AnimalTFDB: a comprehensive animal transcription factor database.

Zhang HM, Chen H, Liu W, Liu H, Gong J, Wang H, Guo AY.

Nucleic Acids Res. 2012 Jan;40(Database issue):D144-9. doi: 10.1093/nar/gkr965.

PMID:
22080564
17.

CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis.

Kutmon M, Kelder T, Mandaviya P, Evelo CT, Coort SL.

PLoS One. 2013 Dec 5;8(12):e82160. doi: 10.1371/journal.pone.0082160.

PMID:
24340000
18.

RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.

Cipriano MJ, Novichkov PN, Kazakov AE, Rodionov DA, Arkin AP, Gelfand MS, Dubchak I.

BMC Genomics. 2013 Apr 2;14:213. doi: 10.1186/1471-2164-14-213.

PMID:
23547897
19.

TFCONES: a database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements.

Lee AP, Yang Y, Brenner S, Venkatesh B.

BMC Genomics. 2007 Nov 29;8:441.

PMID:
18045502
20.

IntNetDB v1.0: an integrated protein-protein interaction network database generated by a probabilistic model.

Xia K, Dong D, Han JD.

BMC Bioinformatics. 2006 Nov 18;7:508.

PMID:
17112386
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