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Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model.

Ingkasuwan P, Netrphan S, Prasitwattanaseree S, Tanticharoen M, Bhumiratana S, Meechai A, Chaijaruwanich J, Takahashi H, Cheevadhanarak S.

BMC Syst Biol. 2012 Aug 16;6:100. doi: 10.1186/1752-0509-6-100.


Diurnal changes in the transcriptome encoding enzymes of starch metabolism provide evidence for both transcriptional and posttranscriptional regulation of starch metabolism in Arabidopsis leaves.

Smith SM, Fulton DC, Chia T, Thorneycroft D, Chapple A, Dunstan H, Hylton C, Zeeman SC, Smith AM.

Plant Physiol. 2004 Sep;136(1):2687-99.


Degradation of Glucan Primers in the Absence of Starch Synthase 4 Disrupts Starch Granule Initiation in Arabidopsis.

Seung D, Lu KJ, Stettler M, Streb S, Zeeman SC.

J Biol Chem. 2016 Sep 23;291(39):20718-28. doi: 10.1074/jbc.M116.730648.


Transcriptome phase distribution analysis reveals diurnal regulated biological processes and key pathways in rice flag leaves and seedling leaves.

Xu W, Yang R, Li M, Xing Z, Yang W, Chen G, Guo H, Gong X, Du Z, Zhang Z, Hu X, Wang D, Qian Q, Wang T, Su Z, Xue Y.

PLoS One. 2011 Mar 2;6(3):e17613. doi: 10.1371/journal.pone.0017613.


Aberrant temporal growth pattern and morphology of root and shoot caused by a defective circadian clock in Arabidopsis thaliana.

Ruts T, Matsubara S, Wiese-Klinkenberg A, Walter A.

Plant J. 2012 Oct;72(1):154-61. doi: 10.1111/j.1365-313X.2012.05073.x.


Starch synthase 4 is essential for coordination of starch granule formation with chloroplast division during Arabidopsis leaf expansion.

Crumpton-Taylor M, Pike M, Lu KJ, Hylton CM, Feil R, Eicke S, Lunn JE, Zeeman SC, Smith AM.

New Phytol. 2013 Dec;200(4):1064-75. doi: 10.1111/nph.12455.


Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves.

Li L, Foster CM, Gan Q, Nettleton D, James MG, Myers AM, Wurtele ES.

Plant J. 2009 May;58(3):485-98. doi: 10.1111/j.1365-313X.2009.03793.x.


[New look at starch degradation in Arabidopsis thaliana L. chloroplasts].

Samojedny D, Orzechowski S.

Postepy Biochem. 2007;53(1):74-83. Review. Polish.


The phytochrome-interacting factor PIF7 negatively regulates DREB1 expression under circadian control in Arabidopsis.

Kidokoro S, Maruyama K, Nakashima K, Imura Y, Narusaka Y, Shinwari ZK, Osakabe Y, Fujita Y, Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K.

Plant Physiol. 2009 Dec;151(4):2046-57. doi: 10.1104/pp.109.147033.


Oscillation of mRNA level and activity of granule-bound starch synthase I in Arabidopsis leaves during the day/night cycle.

Tenorio G, Orea A, Romero JM, Mérida A.

Plant Mol Biol. 2003 Apr;51(6):949-58.


Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.

Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC.

PLoS One. 2011;6(6):e16907. doi: 10.1371/journal.pone.0016907.


A transcriptional dynamic network during Arabidopsis thaliana pollen development.

Wang J, Qiu X, Li Y, Deng Y, Shi T.

BMC Syst Biol. 2011;5 Suppl 3:S8. doi: 10.1186/1752-0509-5-S3-S8.


Thioredoxin-regulated beta-amylase (BAM1) triggers diurnal starch degradation in guard cells, and in mesophyll cells under osmotic stress.

Valerio C, Costa A, Marri L, Issakidis-Bourguet E, Pupillo P, Trost P, Sparla F.

J Exp Bot. 2011 Jan;62(2):545-55. doi: 10.1093/jxb/erq288.


Arabidopsis At5g39790 encodes a chloroplast-localized, carbohydrate-binding, coiled-coil domain-containing putative scaffold protein.

Lohmeier-Vogel EM, Kerk D, Nimick M, Wrobel S, Vickerman L, Muench DG, Moorhead GB.

BMC Plant Biol. 2008 Nov 27;8:120. doi: 10.1186/1471-2229-8-120.


Autophagy contributes to leaf starch degradation.

Wang Y, Yu B, Zhao J, Guo J, Li Y, Han S, Huang L, Du Y, Hong Y, Tang D, Liu Y.

Plant Cell. 2013 Apr;25(4):1383-99. doi: 10.1105/tpc.112.108993.


Regulation of photosynthesis and transcription factor expression by leaf shading and re-illumination in Arabidopsis thaliana leaves.

Parlitz S, Kunze R, Mueller-Roeber B, Balazadeh S.

J Plant Physiol. 2011 Aug 15;168(12):1311-9. doi: 10.1016/j.jplph.2011.02.001.


An Arabidopsis gene network based on the graphical Gaussian model.

Ma S, Gong Q, Bohnert HJ.

Genome Res. 2007 Nov;17(11):1614-25.


Daylength and circadian effects on starch degradation and maltose metabolism.

Lu Y, Gehan JP, Sharkey TD.

Plant Physiol. 2005 Aug;138(4):2280-91.

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