Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 117

1.
2.

Exploration of new chromophore structures leads to the identification of improved blue fluorescent proteins.

Ai HW, Shaner NC, Cheng Z, Tsien RY, Campbell RE.

Biochemistry. 2007 May 22;46(20):5904-10.

PMID:
17444659
3.

Red fluorescent protein DsRed: parametrization of its chromophore as an amino acid residue for computer modeling in the OPLS-AA force field.

Dmitrienko DV, Vrzheshch EP, Drutsa VL, Vrzheshch PV.

Biochemistry (Mosc). 2006 Oct;71(10):1133-52.

PMID:
17125463
4.

Quantum refinement of protein structures: implementation and application to the red fluorescent protein DsRed.M1.

Hsiao YW, Sanchez-Garcia E, Doerr M, Thiel W.

J Phys Chem B. 2010 Nov 25;114(46):15413-23. doi: 10.1021/jp108095n.

PMID:
20977248
5.

Isomerization mechanism of the HcRed fluorescent protein chromophore.

Sun Q, Li Z, Lan Z, Pfisterer C, Doerr M, Fischer S, Smith SC, Thiel W.

Phys Chem Chem Phys. 2012 Aug 28;14(32):11413-24. doi: 10.1039/c2cp41217a.

PMID:
22801745
6.

Physicochemical properties of blue fluorescent protein determined via molecular dynamics simulation.

Krasnenko V, Tkaczyk AH, Tkaczyk ER, Mauring K.

Biopolymers. 2008 Dec;89(12):1136-43. doi: 10.1002/bip.21065.

7.

Molecular modeling of green fluorescent protein: structural effects of chromophore deprotonation.

Patnaik SS, Trohalaki S, Pachter R.

Biopolymers. 2004 Dec 15;75(6):441-52.

PMID:
15497152
8.

QM/MM studies of structural and energetic properties of the far-red fluorescent protein HcRed.

Sun Q, Doerr M, Li Z, Smith SC, Thiel W.

Phys Chem Chem Phys. 2010 Mar 14;12(10):2450-8. doi: 10.1039/b918523b.

PMID:
20449359
9.

Conical intersection dynamics in solution: the chromophore of Green Fluorescent Protein.

Toniolo A, Olsen S, Manohar L, Martínez TJ.

Faraday Discuss. 2004;127:149-63.

PMID:
15471344
10.
11.

Condensed phase molecular dynamics using interpolated potential energy surfaces with application to the resolvation process of coumarin 153.

Park JW, Kim HW, Song CI, Rhee YM.

J Chem Phys. 2011 Jul 7;135(1):014107. doi: 10.1063/1.3605302.

PMID:
21744888
12.

Excited States and Photochemistry of Chromophores in the Photoactive Proteins Explored by the Combined Quantum Mechanical and Molecular Mechanical Calculations.

Liu L, Cui G, Fang WH.

Adv Protein Chem Struct Biol. 2015;100:255-84. doi: 10.1016/bs.apcsb.2015.07.002. Review.

PMID:
26415847
13.

Ultrafast excited state dynamics of the green fluorescent protein chromophore and its kindling fluorescent protein analogue.

Addison K, Heisler IA, Conyard J, Dixon T, Page PC, Meech SR.

Faraday Discuss. 2013;163:277-96; discussion 393-432.

PMID:
24020207
14.

QM/MM study of the monomeric red fluorescent protein DsRed.M1.

Sanchez-Garcia E, Doerr M, Hsiao YW, Thiel W.

J Phys Chem B. 2009 Dec 31;113(52):16622-31. doi: 10.1021/jp9069042.

PMID:
19994834
15.

Dynamics on the electronically excited state surface of the bioluminescent firefly luciferase-oxyluciferin system.

Song CI, Rhee YM.

J Am Chem Soc. 2011 Aug 10;133(31):12040-9. doi: 10.1021/ja201752p.

PMID:
21728350
16.

Green fluorescent protein variants as ratiometric dual emission pH sensors. 2. Excited-state dynamics.

McAnaney TB, Park ES, Hanson GT, Remington SJ, Boxer SG.

Biochemistry. 2002 Dec 31;41(52):15489-94.

PMID:
12501177
17.

Fluorescence spectra of organic dyes in solution: a time dependent multilevel approach.

Barone V, Bloino J, Monti S, Pedone A, Prampolini G.

Phys Chem Chem Phys. 2011 Feb 14;13(6):2160-6. doi: 10.1039/c0cp01320j.

PMID:
21127788
18.

Photophysics and dihedral freedom of the chromophore in yellow, blue, and green fluorescent protein.

Megley CM, Dickson LA, Maddalo SL, Chandler GJ, Zimmer M.

J Phys Chem B. 2009 Jan 8;113(1):302-8. doi: 10.1021/jp806285s.

19.

Towards the realization of ab initio dynamics at the speed of molecular mechanics: simulations with interpolated diabatic Hamiltonian.

Park JW, Rhee YM.

Chemphyschem. 2014 Oct 20;15(15):3183-93. doi: 10.1002/cphc.201402226.

PMID:
25080201
20.

Probing the ground state structure of the green fluorescent protein chromophore using Raman spectroscopy.

Bell AF, He X, Wachter RM, Tonge PJ.

Biochemistry. 2000 Apr 18;39(15):4423-31.

PMID:
10757992

Supplemental Content

Support Center