Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 109

1.

Supervised protein family classification and new family construction.

Yi G, Thon MR, Sze SH.

J Comput Biol. 2012 Aug;19(8):957-67. doi: 10.1089/cmb.2011.0044.

2.

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90.

PMID:
15647305
3.

MACHOS: Markov clusters of homologous subsequences.

Wong S, Ragan MA.

Bioinformatics. 2008 Jul 1;24(13):i77-85. doi: 10.1093/bioinformatics/btn144.

4.

Automatic classification of protein structures relying on similarities between alignments.

Santini G, Soldano H, Pothier J.

BMC Bioinformatics. 2012 Sep 14;13:233. doi: 10.1186/1471-2105-13-233.

5.

Multiple sequence alignment based on profile alignment of intermediate sequences.

Lu Y, Sze SH.

J Comput Biol. 2008 Sep;15(7):767-77. doi: 10.1089/cmb.2007.0132.

PMID:
18662101
6.

DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment.

Subramanian AR, Weyer-Menkhoff J, Kaufmann M, Morgenstern B.

BMC Bioinformatics. 2005 Mar 22;6:66.

7.

An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.

Delorenzi M, Speed T.

Bioinformatics. 2002 Apr;18(4):617-25.

PMID:
12016059
8.
9.

Protein family classification using sparse Markov transducers.

Eskin E, Grundy WN, Singer Y.

Proc Int Conf Intell Syst Mol Biol. 2000;8:134-45.

PMID:
10977074
10.

Motif-based protein sequence classification using neural networks.

Blekas K, Fotiadis DI, Likas A.

J Comput Biol. 2005;12(1):64-82.

PMID:
15725734
11.

Protein family classification using sparse markov transducers.

Eskin E, Noble WS, Singer Y.

J Comput Biol. 2003;10(2):187-213.

PMID:
12804091
12.
13.

Clustering of proximal sequence space for the identification of protein families.

Abascal F, Valencia A.

Bioinformatics. 2002 Jul;18(7):908-21.

PMID:
12117788
14.

A sequence alignment-independent method for protein classification.

Vries JK, Munshi R, Tobi D, Klein-Seetharaman J, Benos PV, Bahar I.

Appl Bioinformatics. 2004;3(2-3):137-48.

PMID:
15693739
15.

A fast hierarchical clustering algorithm for large-scale protein sequence data sets.

Szilágyi SM, Szilágyi L.

Comput Biol Med. 2014 May;48:94-101. doi: 10.1016/j.compbiomed.2014.02.016.

PMID:
24657908
16.

Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Pascual-García A, Abia D, Ortiz AR, Bastolla U.

PLoS Comput Biol. 2009 Mar;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331.

17.

Protein families and TRIBES in genome sequence space.

Enright AJ, Kunin V, Ouzounis CA.

Nucleic Acids Res. 2003 Aug 1;31(15):4632-8.

18.

CLANS: a Java application for visualizing protein families based on pairwise similarity.

Frickey T, Lupas A.

Bioinformatics. 2004 Dec 12;20(18):3702-4.

PMID:
15284097
19.

Predicting allergenic proteins using wavelet transform.

Li KB, Issac P, Krishnan A.

Bioinformatics. 2004 Nov 1;20(16):2572-8.

PMID:
15117757
20.

Supplemental Content

Support Center