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Items: 1 to 20 of 67

1.

Integral quantification accuracy estimation for reporter ion-based quantitative proteomics (iQuARI).

Vaudel M, Burkhart JM, Radau S, Zahedi RP, Martens L, Sickmann A.

J Proteome Res. 2012 Oct 5;11(10):5072-80. doi: 10.1021/pr300247u. Epub 2012 Aug 30.

PMID:
22874012
2.

A complex standard for protein identification, designed by evolution.

Vaudel M, Burkhart JM, Breiter D, Zahedi RP, Sickmann A, Martens L.

J Proteome Res. 2012 Oct 5;11(10):5065-71. doi: 10.1021/pr300055q. Epub 2012 Sep 13.

3.

Combination of gas-phase fractionation and MS³ acquisition modes for relative protein quantification with isobaric tagging.

Dayon L, Sonderegger B, Kussmann M.

J Proteome Res. 2012 Oct 5;11(10):5081-9. doi: 10.1021/pr300519c. Epub 2012 Sep 14.

PMID:
22946824
4.

Estimating influence of cofragmentation on peptide quantification and identification in iTRAQ experiments by simulating multiplexed spectra.

Li H, Hwang KB, Mun DG, Kim H, Lee H, Lee SW, Paek E.

J Proteome Res. 2014 Jul 3;13(7):3488-97. doi: 10.1021/pr500060d. Epub 2014 Jun 23.

PMID:
24918111
5.

Robust workflow for iTRAQ-based peptide and protein quantification.

Beck F, Burkhart JM, Geiger J, Zahedi RP, Sickmann A.

Methods Mol Biol. 2012;893:101-13. doi: 10.1007/978-1-61779-885-6_8.

PMID:
22665297
6.

Proteomics of Pyrococcus furiosus, a hyperthermophilic archaeon refractory to traditional methods.

Lee AM, Sevinsky JR, Bundy JL, Grunden AM, Stephenson JL Jr.

J Proteome Res. 2009 Aug;8(8):3844-51. doi: 10.1021/pr801119h.

PMID:
19425607
7.

Quantitative accuracy in mass spectrometry based proteomics of complex samples: the impact of labeling and precursor interference.

Sandberg A, Branca RM, Lehtiö J, Forshed J.

J Proteomics. 2014 Jan 16;96:133-44. doi: 10.1016/j.jprot.2013.10.035. Epub 2013 Nov 5.

8.

Ultra-high intra-spectrum mass accuracy enables unambiguous identification of fragment reporter ions in isobaric multiplexed quantitative proteomics.

Pachl F, Fellenberg K, Wagner C, Kuster B.

Proteomics. 2012 May;12(9):1328-32. doi: 10.1002/pmic.201100622.

PMID:
22589182
9.

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

Li Z, Adams RM, Chourey K, Hurst GB, Hettich RL, Pan C.

J Proteome Res. 2012 Mar 2;11(3):1582-90. doi: 10.1021/pr200748h. Epub 2012 Feb 16.

PMID:
22188275
10.

BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics.

Sheng Q, Dai J, Wu Y, Tang H, Zeng R.

J Proteome Res. 2012 Mar 2;11(3):1494-502. doi: 10.1021/pr200194p. Epub 2012 Feb 8.

PMID:
22217156
11.

Relative protein quantification by MS/MS using the tandem mass tag technology.

Dayon L, Sanchez JC.

Methods Mol Biol. 2012;893:115-27. doi: 10.1007/978-1-61779-885-6_9.

PMID:
22665298
12.

iTRAQ protein quantification: a quality-controlled workflow.

Burkhart JM, Vaudel M, Zahedi RP, Martens L, Sickmann A.

Proteomics. 2011 Mar;11(6):1125-34. doi: 10.1002/pmic.201000711. Epub 2011 Feb 16.

PMID:
21328540
13.

Quantitative proteome analysis using isobaric peptide termini labeling (IPTL).

Arntzen MO, Koehler CJ, Treumann A, Thiede B.

Methods Mol Biol. 2011;753:65-76. doi: 10.1007/978-1-61779-148-2_5.

PMID:
21604116
14.

Absolute quantification strategies in proteomics based on mass spectrometry.

Brönstrup M.

Expert Rev Proteomics. 2004 Dec;1(4):503-12. Review.

PMID:
15966845
15.

Significance analysis of microarray for relative quantitation of LC/MS data in proteomics.

Roxas BA, Li Q.

BMC Bioinformatics. 2008 Apr 10;9:187. doi: 10.1186/1471-2105-9-187.

16.

Tissue proteomics by one-dimensional gel electrophoresis combined with label-free protein quantification.

Vasilj A, Gentzel M, Ueberham E, Gebhardt R, Shevchenko A.

J Proteome Res. 2012 Jul 6;11(7):3680-9. doi: 10.1021/pr300147z. Epub 2012 Jun 21.

PMID:
22671763
17.

Search and decoy: the automatic identification of mass spectra.

Eisenacher M, Kohl M, Turewicz M, Koch MH, Uszkoreit J, Stephan C.

Methods Mol Biol. 2012;893:445-88. doi: 10.1007/978-1-61779-885-6_28.

PMID:
22665317
18.

Proteomics of Pyrococcus furiosus (Pfu): Identification of Extracted Proteins by Three Independent Methods.

Wong CC, Cociorva D, Miller CA, Schmidt A, Monell C, Aebersold R, Yates JR 3rd.

J Proteome Res. 2013 Feb 1;12(2):763-70. doi: 10.1021/pr300840j. Epub 2013 Jan 18.

19.

High throughput proteome screening for biomarker detection.

Pan S, Zhang H, Rush J, Eng J, Zhang N, Patterson D, Comb MJ, Aebersold R.

Mol Cell Proteomics. 2005 Feb;4(2):182-90. Epub 2005 Jan 5.

20.

IsobariQ: software for isobaric quantitative proteomics using IPTL, iTRAQ, and TMT.

Arntzen MØ, Koehler CJ, Barsnes H, Berven FS, Treumann A, Thiede B.

J Proteome Res. 2011 Feb 4;10(2):913-20. doi: 10.1021/pr1009977. Epub 2010 Nov 29.

PMID:
21067241

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