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Items: 1 to 20 of 99

1.

Coordinating genome expression with cell size.

Marguerat S, Bähler J.

Trends Genet. 2012 Nov;28(11):560-5. doi: 10.1016/j.tig.2012.07.003. Epub 2012 Aug 2. Review.

3.

Gene expression measurements normalized to cell number reveal large scale differences due to cell size changes, transcriptional amplification and transcriptional repression in CHO cells.

Fomina-Yadlin D, Du Z, McGrew JT.

J Biotechnol. 2014 Nov 10;189:58-69. doi: 10.1016/j.jbiotec.2014.08.037. Epub 2014 Sep 4.

PMID:
25194670
4.

Temperature-size relations from the cellular-genomic perspective.

Hessen DO, Daufresne M, Leinaas HP.

Biol Rev Camb Philos Soc. 2013 May;88(2):476-89. doi: 10.1111/brv.12006. Epub 2012 Dec 18. Review.

PMID:
23551915
5.

A coordinated global control over cellular transcription.

Zhurinsky J, Leonhard K, Watt S, Marguerat S, Bähler J, Nurse P.

Curr Biol. 2010 Nov 23;20(22):2010-5. doi: 10.1016/j.cub.2010.10.002. Epub 2010 Oct 21.

6.

Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response.

Geijer C, Pirkov I, Vongsangnak W, Ericsson A, Nielsen J, Krantz M, Hohmann S.

BMC Genomics. 2012 Oct 15;13:554. doi: 10.1186/1471-2164-13-554.

7.

Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms.

Padovan-Merhar O, Nair GP, Biaesch AG, Mayer A, Scarfone S, Foley SW, Wu AR, Churchman LS, Singh A, Raj A.

Mol Cell. 2015 Apr 16;58(2):339-52. doi: 10.1016/j.molcel.2015.03.005. Epub 2015 Apr 9.

8.

Gene length as a biological timer to establish temporal transcriptional regulation.

Kirkconnell KS, Magnuson B, Paulsen MT, Lu B, Bedi K, Ljungman M.

Cell Cycle. 2017 Feb;16(3):259-270. doi: 10.1080/15384101.2016.1234550. Epub 2017 Jan 5.

PMID:
28055303
9.

Eukaryotic transcriptional dynamics: from single molecules to cell populations.

Coulon A, Chow CC, Singer RH, Larson DR.

Nat Rev Genet. 2013 Aug;14(8):572-84. doi: 10.1038/nrg3484. Epub 2013 Jul 9. Review.

10.

Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.

Sabò A, Kress TR, Pelizzola M, de Pretis S, Gorski MM, Tesi A, Morelli MJ, Bora P, Doni M, Verrecchia A, Tonelli C, Fagà G, Bianchi V, Ronchi A, Low D, Müller H, Guccione E, Campaner S, Amati B.

Nature. 2014 Jul 24;511(7510):488-492. doi: 10.1038/nature13537. Epub 2014 Jul 9.

11.

Genome-wide transcription factor binding: beyond direct target regulation.

MacQuarrie KL, Fong AP, Morse RH, Tapscott SJ.

Trends Genet. 2011 Apr;27(4):141-8. doi: 10.1016/j.tig.2011.01.001. Epub 2011 Feb 4. Review.

13.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
14.

Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma.

Gregory TR.

Biol Rev Camb Philos Soc. 2001 Feb;76(1):65-101. Review.

PMID:
11325054
15.

Sumoylation at chromatin governs coordinated repression of a transcriptional program essential for cell growth and proliferation.

Neyret-Kahn H, Benhamed M, Ye T, Le Gras S, Cossec JC, Lapaquette P, Bischof O, Ouspenskaia M, Dasso M, Seeler J, Davidson I, Dejean A.

Genome Res. 2013 Oct;23(10):1563-79. doi: 10.1101/gr.154872.113. Epub 2013 Jul 26.

16.

Salinity- and population-dependent genome regulatory response during osmotic acclimation in the killifish (Fundulus heteroclitus) gill.

Whitehead A, Roach JL, Zhang S, Galvez F.

J Exp Biol. 2012 Apr 15;215(Pt 8):1293-305. doi: 10.1242/jeb.062075.

17.

Structural coupling between RNA polymerase composition and DNA supercoiling in coordinating transcription: a global role for the omega subunit?

Geertz M, Travers A, Mehandziska S, Sobetzko P, Chandra-Janga S, Shimamoto N, Muskhelishvili G.

MBio. 2011 Aug 2;2(4). pii: e00034-11. doi: 10.1128/mBio.00034-11. Print 2011.

18.
19.

Overexpression of Far1, a cyclin-dependent kinase inhibitor, induces a large transcriptional reprogramming in which RNA synthesis senses Far1 in a Sfp1-mediated way.

Busti S, Gotti L, Balestrieri C, Querin L, Drovandi G, Felici G, Mavelli G, Bertolazzi P, Alberghina L, Vanoni M.

Biotechnol Adv. 2012 Jan-Feb;30(1):185-201. doi: 10.1016/j.biotechadv.2011.09.007. Epub 2011 Sep 21.

PMID:
21964263
20.

RNA polymerase II pausing as a context-dependent reader of the genome.

Scheidegger A, Nechaev S.

Biochem Cell Biol. 2016 Feb;94(1):82-92. doi: 10.1139/bcb-2015-0045. Epub 2015 Sep 15. Review.

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