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Items: 1 to 20 of 110

1.

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments.

Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS.

Nat Protoc. 2012 Jul 26;7(8):1534-50. doi: 10.1038/nprot.2012.086.

2.

Genome-wide annotation and quantitation of translation by ribosome profiling.

Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS.

Curr Protoc Mol Biol. 2013 Jul;Chapter 4:Unit 4.18. doi: 10.1002/0471142727.mb0418s103.

3.

Genome-wide translational profiling by ribosome footprinting.

Ingolia NT.

Methods Enzymol. 2010;470:119-42. doi: 10.1016/S0076-6879(10)70006-9.

PMID:
20946809
4.

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS.

Science. 2009 Apr 10;324(5924):218-23. doi: 10.1126/science.1168978.

5.

Simple and inexpensive ribosome profiling analysis of mRNA translation.

Reid DW, Shenolikar S, Nicchitta CV.

Methods. 2015 Dec;91:69-74. doi: 10.1016/j.ymeth.2015.07.003.

6.

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.

Ingolia NT, Lareau LF, Weissman JS.

Cell. 2011 Nov 11;147(4):789-802. doi: 10.1016/j.cell.2011.10.002.

7.

Ribosome profiling reveals the what, when, where and how of protein synthesis.

Brar GA, Weissman JS.

Nat Rev Mol Cell Biol. 2015 Nov;16(11):651-64. doi: 10.1038/nrm4069. Review.

PMID:
26465719
8.

High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling.

Irigoyen N, Firth AE, Jones JD, Chung BY, Siddell SG, Brierley I.

PLoS Pathog. 2016 Feb 26;12(2):e1005473. doi: 10.1371/journal.ppat.1005473.

9.

Genome-Wide Profiling of Alternative Translation Initiation Sites.

Gao X, Wan J, Qian SB.

Methods Mol Biol. 2016;1358:303-16. doi: 10.1007/978-1-4939-3067-8_19.

PMID:
26463392
10.

Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale.

Michel AM, Baranov PV.

Wiley Interdiscip Rev RNA. 2013 Sep-Oct;4(5):473-90. doi: 10.1002/wrna.1172. Review.

11.

Widespread Co-translational RNA Decay Reveals Ribosome Dynamics.

Pelechano V, Wei W, Steinmetz LM.

Cell. 2015 Jun 4;161(6):1400-12. doi: 10.1016/j.cell.2015.05.008.

12.

Ribosome Footprint Profiling of Translation throughout the Genome.

Ingolia NT.

Cell. 2016 Mar 24;165(1):22-33. doi: 10.1016/j.cell.2016.02.066.

PMID:
27015305
13.

Ribosome profiling: a tool for quantitative evaluation of dynamics in mRNA translation.

Juntawong P, Hummel M, Bazin J, Bailey-Serres J.

Methods Mol Biol. 2015;1284:139-73. doi: 10.1007/978-1-4939-2444-8_7.

PMID:
25757771
14.

Translation Analysis at the Genome Scale by Ribosome Profiling.

Baudin-Baillieu A, Hatin I, Legendre R, Namy O.

Methods Mol Biol. 2016;1361:105-24. doi: 10.1007/978-1-4939-3079-1_7. Review.

PMID:
26483019
15.

Deciphering poxvirus gene expression by RNA sequencing and ribosome profiling.

Yang Z, Cao S, Martens CA, Porcella SF, Xie Z, Ma M, Shen B, Moss B.

J Virol. 2015 Jul;89(13):6874-86. doi: 10.1128/JVI.00528-15.

16.

Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis.

Juntawong P, Girke T, Bazin J, Bailey-Serres J.

Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):E203-12. doi: 10.1073/pnas.1317811111.

17.

Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments.

Lareau LF, Hite DH, Hogan GJ, Brown PO.

Elife. 2014 May 9;3:e01257. doi: 10.7554/eLife.01257.

18.

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Crappé J, Ndah E, Koch A, Steyaert S, Gawron D, De Keulenaer S, De Meester E, De Meyer T, Van Criekinge W, Van Damme P, Menschaert G.

Nucleic Acids Res. 2015 Mar 11;43(5):e29. doi: 10.1093/nar/gku1283.

19.

A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo.

Zoschke R, Watkins KP, Barkan A.

Plant Cell. 2013 Jun;25(6):2265-75. doi: 10.1105/tpc.113.111567.

20.

Dynamics of ribosome scanning and recycling revealed by translation complex profiling.

Archer SK, Shirokikh NE, Beilharz TH, Preiss T.

Nature. 2016 Jul 28;535(7613):570-4.

PMID:
27437580
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