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Items: 1 to 20 of 112

1.

Bioinformatic analysis of barcoded cDNA libraries for small RNA profiling by next-generation sequencing.

Farazi TA, Brown M, Morozov P, Ten Hoeve JJ, Ben-Dov IZ, Hovestadt V, Hafner M, Renwick N, Mihailović A, Wessels LF, Tuschl T.

Methods. 2012 Oct;58(2):171-87. doi: 10.1016/j.ymeth.2012.07.020. Epub 2012 Jul 23.

2.

Barcoded cDNA library preparation for small RNA profiling by next-generation sequencing.

Hafner M, Renwick N, Farazi TA, Mihailović A, Pena JT, Tuschl T.

Methods. 2012 Oct;58(2):164-70. doi: 10.1016/j.ymeth.2012.07.030. Epub 2012 Aug 7.

3.

Generation of plant small RNA cDNA libraries for high-throughput sequencing.

Zhu QH, Helliwell CA.

Methods Mol Biol. 2012;894:123-37. doi: 10.1007/978-1-61779-882-5_9.

PMID:
22678577
4.

Next-generation sequencing of miRNAs with Roche 454 GS-FLX technology: steps for a successful application.

Soares AR, Pereira PM, Santos MA.

Methods Mol Biol. 2012;822:189-204. doi: 10.1007/978-1-61779-427-8_13.

PMID:
22144200
5.

Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis.

Yang X, Wang L, Yuan D, Lindsey K, Zhang X.

J Exp Bot. 2013 Apr;64(6):1521-36. doi: 10.1093/jxb/ert013. Epub 2013 Feb 4.

6.

High-throughput multiplex sequencing of miRNA.

Vigneault F, Ter-Ovanesyan D, Alon S, Eminaga S, C Christodoulou D, Seidman JG, Eisenberg E, M Church G.

Curr Protoc Hum Genet. 2012 Apr;Chapter 11:Unit 11.12.1-10. doi: 10.1002/0471142905.hg1112s73.

7.

Quantification of microRNA expression with next-generation sequencing.

Eminaga S, Christodoulou DC, Vigneault F, Church GM, Seidman JG.

Curr Protoc Mol Biol. 2013 Jul;Chapter 4:Unit 4.17. doi: 10.1002/0471142727.mb0417s103.

8.

Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches.

Li YF, Zheng Y, Jagadeeswaran G, Sunkar R.

Plant Sci. 2013 Apr;203-204:17-24. doi: 10.1016/j.plantsci.2012.12.014. Epub 2013 Jan 3.

PMID:
23415324
9.

Construction of small RNA cDNA libraries for high-throughput sequencing.

Lu C, Shedge V.

Methods Mol Biol. 2011;729:141-52. doi: 10.1007/978-1-61779-065-2_9.

PMID:
21365488
10.

MicroRNA Expression Profile in Penile Cancer Revealed by Next-Generation Small RNA Sequencing.

Zhang L, Wei P, Shen X, Zhang Y, Xu B, Zhou J, Fan S, Hao Z, Shi H, Zhang X, Kong R, Xu L, Gao J, Zou D, Liang C.

PLoS One. 2015 Jul 9;10(7):e0131336. doi: 10.1371/journal.pone.0131336. eCollection 2015.

11.

Identification of extracellular miRNA in archived serum samples by next-generation sequencing from RNA extracted using multiple methods.

Gautam A, Kumar R, Dimitrov G, Hoke A, Hammamieh R, Jett M.

Mol Biol Rep. 2016 Oct;43(10):1165-78. doi: 10.1007/s11033-016-4043-6. Epub 2016 Aug 10.

12.

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis.

Hao DC, Yang L, Xiao PG, Liu M.

Physiol Plant. 2012 Dec;146(4):388-403. doi: 10.1111/j.1399-3054.2012.01668.x. Epub 2012 Jul 25.

PMID:
22708792
13.

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.

Hafner M, Renwick N, Brown M, Mihailović A, Holoch D, Lin C, Pena JT, Nusbaum JD, Morozov P, Ludwig J, Ojo T, Luo S, Schroth G, Tuschl T.

RNA. 2011 Sep;17(9):1697-712. doi: 10.1261/rna.2799511. Epub 2011 Jul 20.

14.

Small RNA library construction from minute biological samples.

Matts JA, Sytnikova Y, Chirn GW, Igloi GL, Lau NC.

Methods Mol Biol. 2014;1093:123-36. doi: 10.1007/978-1-62703-694-8_10.

15.

Identification and expression profiling of Vigna mungo microRNAs from leaf small RNA transcriptome by deep sequencing.

Paul S, Kundu A, Pal A.

J Integr Plant Biol. 2014 Jan;56(1):15-23. doi: 10.1111/jipb.12115. Epub 2013 Dec 19.

PMID:
24138283
16.

New methods for next generation sequencing based microRNA expression profiling.

Buermans HP, Ariyurek Y, van Ommen G, den Dunnen JT, 't Hoen PA.

BMC Genomics. 2010 Dec 20;11:716. doi: 10.1186/1471-2164-11-716.

17.

Detection of small RNAs and microRNAs using deep sequencing technology.

Havecker ER.

Methods Mol Biol. 2011;732:55-68. doi: 10.1007/978-1-61779-083-6_5.

PMID:
21431705
18.

Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing.

Peláez P, Trejo MS, Iñiguez LP, Estrada-Navarrete G, Covarrubias AA, Reyes JL, Sanchez F.

BMC Genomics. 2012 Mar 6;13:83. doi: 10.1186/1471-2164-13-83.

19.

Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by high-throughput sequencing.

Chi X, Yang Q, Chen X, Wang J, Pan L, Chen M, Yang Z, He Y, Liang X, Yu S.

PLoS One. 2011;6(11):e27530. doi: 10.1371/journal.pone.0027530. Epub 2011 Nov 16.

20.

MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries.

Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M.

Stem Cells. 2008 Oct;26(10):2496-505. doi: 10.1634/stemcells.2008-0356. Epub 2008 Jun 26.

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