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Items: 1 to 20 of 49

1.

Detecting cancer outlier genes with potential rearrangement using gene expression data and biological networks.

Alshalalfa M, Bismar TA, Alhajj R.

Adv Bioinformatics. 2012;2012:373506. doi: 10.1155/2012/373506. Epub 2012 Jun 28.

2.

Targeted next-generation sequencing of advanced prostate cancer identifies potential therapeutic targets and disease heterogeneity.

Beltran H, Yelensky R, Frampton GM, Park K, Downing SR, MacDonald TY, Jarosz M, Lipson D, Tagawa ST, Nanus DM, Stephens PJ, Mosquera JM, Cronin MT, Rubin MA.

Eur Urol. 2013 May;63(5):920-6. doi: 10.1016/j.eururo.2012.08.053. Epub 2012 Sep 5.

3.

GTI: a novel algorithm for identifying outlier gene expression profiles from integrated microarray datasets.

Mpindi JP, Sara H, Haapa-Paananen S, Kilpinen S, Pisto T, Bucher E, Ojala K, Iljin K, Vainio P, Björkman M, Gupta S, Kohonen P, Nees M, Kallioniemi O.

PLoS One. 2011 Feb 18;6(2):e17259. doi: 10.1371/journal.pone.0017259. Erratum in: PLoS One. 2011;6(4). doi:10.1371/annotation/7d571883-faf0-4f66-86a2-806c36c4741c.

4.

Increased androgen receptor gene copy number is associated with TMPRSS2-ERG rearrangement in prostatic small cell carcinoma.

Wang L, Williamson SR, Zhang S, Huang J, Montironi R, Davison DD, Wang M, Yao JL, Lopez-Beltran A, Osunkoya AO, MacLennan GT, Baldridge LA, Du X, Cheng L.

Mol Carcinog. 2015 Sep;54(9):900-7. doi: 10.1002/mc.22162. Epub 2014 Apr 29.

PMID:
24777847
5.

Robust gene network analysis reveals alteration of the STAT5a network as a hallmark of prostate cancer.

Reddy A, Huang CC, Liu H, Delisi C, Nevalainen MT, Szalma S, Bhanot G.

Genome Inform. 2010;24:139-53.

PMID:
22081596
6.

The gene expression landscape of breast cancer is shaped by tumor protein p53 status and epithelial-mesenchymal transition.

Fredlund E, Staaf J, Rantala JK, Kallioniemi O, Borg A, Ringnér M.

Breast Cancer Res. 2012 Jul 27;14(4):R113. doi: 10.1186/bcr3236.

7.
8.

A network biology approach to prostate cancer.

Ergün A, Lawrence CA, Kohanski MA, Brennan TA, Collins JJ.

Mol Syst Biol. 2007;3:82. Epub 2007 Feb 13.

9.

mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.

Shi X, Gu J, Chen X, Shajahan A, Hilakivi-Clarke L, Clarke R, Xuan J.

BMC Syst Biol. 2013;7 Suppl 5:S4. doi: 10.1186/1752-0509-7-S5-S4. Epub 2013 Dec 9.

10.

Alterations of the retinoblastoma gene in human prostate adenocarcinoma.

Tricoli JV, Gumerlock PH, Yao JL, Chi SG, D'Souza SA, Nestok BR, deVere White RW.

Genes Chromosomes Cancer. 1996 Feb;15(2):108-14.

PMID:
8834174
11.

Rearrangement of the ETS genes ETV-1, ETV-4, ETV-5, and ELK-4 is a clonal event during prostate cancer progression.

Shaikhibrahim Z, Braun M, Nikolov P, Boehm D, Scheble V, Menon R, Fend F, Kristiansen G, Perner S, Wernert N.

Hum Pathol. 2012 Nov;43(11):1910-6. doi: 10.1016/j.humpath.2012.01.018. Epub 2012 May 7.

PMID:
22569213
12.

Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data.

Zhang J, Zhang S, Wang Y, Zhang XS.

BMC Syst Biol. 2013;7 Suppl 2:S4. doi: 10.1186/1752-0509-7-S2-S4. Epub 2013 Oct 14.

13.
14.

Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates.

Fujita A, Gomes LR, Sato JR, Yamaguchi R, Thomaz CE, Sogayar MC, Miyano S.

BMC Syst Biol. 2008 Dec 5;2:106. doi: 10.1186/1752-0509-2-106.

15.

Network analysis of genomic alteration profiles reveals co-altered functional modules and driver genes for glioblastoma.

Gu Y, Wang H, Qin Y, Zhang Y, Zhao W, Qi L, Zhang Y, Wang C, Guo Z.

Mol Biosyst. 2013 Mar;9(3):467-77. doi: 10.1039/c2mb25528f. Epub 2013 Jan 23.

PMID:
23344900
16.

miRNA-mRNA correlation-network modules in human prostate cancer and the differences between primary and metastatic tumor subtypes.

Zhang W, Edwards A, Fan W, Flemington EK, Zhang K.

PLoS One. 2012;7(6):e40130. doi: 10.1371/journal.pone.0040130. Epub 2012 Jun 29.

17.

DNA microarray analysis reveals metastasis-associated genes in rat prostate cancer cell lines.

Reyes I, Tiwari R, Geliebter J, Reyes N.

Biomedica. 2007 Jun;27(2):190-203. Epub 2007 Aug 21.

18.

Detecting disease associated modules and prioritizing active genes based on high throughput data.

Qiu YQ, Zhang S, Zhang XS, Chen L.

BMC Bioinformatics. 2010 Jan 13;11:26. doi: 10.1186/1471-2105-11-26.

19.

Epigenetic mapping and functional analysis in a breast cancer metastasis model using whole-genome promoter tiling microarrays.

Rodenhiser DI, Andrews J, Kennette W, Sadikovic B, Mendlowitz A, Tuck AB, Chambers AF.

Breast Cancer Res. 2008;10(4):R62. doi: 10.1186/bcr2121. Epub 2008 Jul 18.

20.

Novel 5' fusion partners of ETV1 and ETV4 in prostate cancer.

Barros-Silva JD, Paulo P, Bakken AC, Cerveira N, Løvf M, Henrique R, Jerónimo C, Lothe RA, Skotheim RI, Teixeira MR.

Neoplasia. 2013 Jul;15(7):720-6.

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