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Items: 1 to 20 of 72

1.

Identification of shortened 3' untranslated regions from expression arrays.

Martignetti L, Zinovyev A, Barillot E.

J Bioinform Comput Biol. 2012 Apr;10(2):1241001. doi: 10.1142/S0219720012410016.

PMID:
22809337
2.

Detection of novel 3' untranslated region extensions with 3' expression microarrays.

Thorrez L, Tranchevent LC, Chang HJ, Moreau Y, Schuit F.

BMC Genomics. 2010 Mar 26;11:205. doi: 10.1186/1471-2164-11-205.

3.

The DIANA-mirExTra web server: from gene expression data to microRNA function.

Alexiou P, Maragkakis M, Papadopoulos GL, Simmosis VA, Zhang L, Hatzigeorgiou AG.

PLoS One. 2010 Feb 11;5(2):e9171. doi: 10.1371/journal.pone.0009171.

4.

A change-point model for identifying 3'UTR switching by next-generation RNA sequencing.

Wang W, Wei Z, Li H.

Bioinformatics. 2014 Aug 1;30(15):2162-70. doi: 10.1093/bioinformatics/btu189. Epub 2014 Apr 11.

5.

Specific Tandem 3'UTR Patterns and Gene Expression Profiles in Mouse Thy1+ Germline Stem Cells.

Huang Y, Xiong Y, Lin Z, Feng X, Jiang X, Songyang Z, Huang J.

PLoS One. 2015 Dec 29;10(12):e0145417. doi: 10.1371/journal.pone.0145417. eCollection 2015.

6.

Identification of 3' gene ends using transcriptional and genomic conservation across vertebrates.

Morgan M, Iaconcig A, Muro AF.

BMC Genomics. 2012 Dec 18;13:708. doi: 10.1186/1471-2164-13-708.

7.

3'UTRs take a long shot in the brain.

Wang L, Yi R.

Bioessays. 2014 Jan;36(1):39-45. doi: 10.1002/bies.201300100. Epub 2013 Sep 20. Review.

8.

The 3' untranslated region of the two cytosolic glutamine synthetase (GS(1)) genes in alfalfa (Medicago sativa) regulates transcript stability in response to glutamine.

Simon B, Sengupta-Gopalan C.

Planta. 2010 Oct;232(5):1151-62. doi: 10.1007/s00425-010-1247-1. Epub 2010 Aug 13.

PMID:
20706735
9.

The impact of miRNA target sites in coding sequences and in 3'UTRs.

Fang Z, Rajewsky N.

PLoS One. 2011 Mar 22;6(3):e18067. doi: 10.1371/journal.pone.0018067.

10.

3'UTR shortening identifies high-risk cancers with targeted dysregulation of the ceRNA network.

Li L, Wang D, Xue M, Mi X, Liang Y, Wang P.

Sci Rep. 2014 Jun 23;4:5406. doi: 10.1038/srep05406.

11.

Evolution of Hox post-transcriptional regulation by alternative polyadenylation and microRNA modulation within 12 Drosophila genomes.

Patraquim P, Warnefors M, Alonso CR.

Mol Biol Evol. 2011 Sep;28(9):2453-60. doi: 10.1093/molbev/msr073. Epub 2011 Mar 24.

PMID:
21436120
12.

Replication error deficient and proficient colorectal cancer gene expression differences caused by 3'UTR polyT sequence deletions.

Wilding JL, McGowan S, Liu Y, Bodmer WF.

Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21058-63. doi: 10.1073/pnas.1015604107. Epub 2010 Nov 19.

13.

An 11-nt sequence polymorphism at the 3'UTR of human SFTPA1 and SFTPA2 gene variants differentially affect gene expression levels and miRNA regulation in cell culture.

Silveyra P, DiAngelo SL, Floros J.

Am J Physiol Lung Cell Mol Physiol. 2014 Jul 1;307(1):L106-19. doi: 10.1152/ajplung.00313.2013. Epub 2014 May 2.

14.

An alternative HER-2/neu transcript of 8 kb has an extended 3'UTR and displays increased stability in SKOV-3 ovarian carcinoma cells.

Doherty JK, Bond CT, Hua W, Adelman JP, Clinton GM.

Gynecol Oncol. 1999 Sep;74(3):408-15.

PMID:
10479501
15.

A human 3'UTR clone collection to study post-transcriptional gene regulation.

Kotagama K, Babb CS, Wolter JM, Murphy RP, Mangone M.

BMC Genomics. 2015 Dec 9;16:1036. doi: 10.1186/s12864-015-2238-1.

16.

Developmental RNA processing of 3'UTRs in Hox mRNAs as a context-dependent mechanism modulating visibility to microRNAs.

Thomsen S, Azzam G, Kaschula R, Williams LS, Alonso CR.

Development. 2010 Sep 1;137(17):2951-60. doi: 10.1242/dev.047324. Epub 2010 Jul 28.

17.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

RisueƱo A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

18.

Identification of novel variant, 1484delG in the 3'UTR of H3F3B, a member of the histone 3B replacement family, in ovarian tumors.

Presneau N, Shen Z, Provencher D, Mes-Masson AM, Tonin PN.

Int J Oncol. 2005 Jun;26(6):1621-7.

PMID:
15870878
19.

Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.

Yu H, Wang F, Tu K, Xie L, Li YY, Li YX.

BMC Bioinformatics. 2007 Jun 11;8:194.

20.

Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection.

Sales G, Coppe A, Bicciato S, Bortoluzzi S, Romualdi C.

Nucleic Acids Res. 2010 Apr;38(7):e97. doi: 10.1093/nar/gkp1239. Epub 2010 Jan 13.

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