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Items: 1 to 20 of 97

1.

Sources of pre-analytical variations in yield of DNA extracted from blood samples: analysis of 50,000 DNA samples in EPIC.

Caboux E, Lallemand C, Ferro G, Hémon B, Mendy M, Biessy C, Sims M, Wareham N, Britten A, Boland A, Hutchinson A, Siddiq A, Vineis P, Riboli E, Romieu I, Rinaldi S, Gunter MJ, Peeters PH, van der Schouw YT, Travis R, Bueno-de-Mesquita HB, Canzian F, Sánchez MJ, Skeie G, Olsen KS, Lund E, Bilbao R, Sala N, Barricarte A, Palli D, Navarro C, Panico S, Redondo ML, Polidoro S, Dossus L, Boutron-Ruault MC, Clavel-Chapelon F, Trichopoulou A, Trichopoulos D, Lagiou P, Boeing H, Fisher E, Tumino R, Agnoli C, Hainaut P.

PLoS One. 2012;7(7):e39821. doi: 10.1371/journal.pone.0039821. Epub 2012 Jul 13.

2.

Quality assessment of buccal versus blood genomic DNA using the Affymetrix 500 K GeneChip.

Woo JG, Sun G, Haverbusch M, Indugula S, Martin LJ, Broderick JP, Deka R, Woo D.

BMC Genet. 2007 Nov 8;8:79.

3.

Clinical trial participant characteristics and saliva and DNA metrics.

Nishita DM, Jack LM, McElroy M, McClure JB, Richards J, Swan GE, Bergen AW.

BMC Med Res Methodol. 2009 Oct 29;9:71. doi: 10.1186/1471-2288-9-71.

4.

Quality of DNA extracted from saliva samples collected with the Oragene™ DNA self-collection kit.

Nunes AP, Oliveira IO, Santos BR, Millech C, Silva LP, González DA, Hallal PC, Menezes AM, Araújo CL, Barros FC.

BMC Med Res Methodol. 2012 May 4;12:65. doi: 10.1186/1471-2288-12-65.

5.

Buffy coat specimens remain viable as a DNA source for highly multiplexed genome-wide genetic tests after long term storage.

Mychaleckyj JC, Farber EA, Chmielewski J, Artale J, Light LS, Bowden DW, Hou X, Marcovina SM.

J Transl Med. 2011 Jun 10;9:91. doi: 10.1186/1479-5876-9-91.

6.

Evaluation of under- and overreporting of energy intake in the 24-hour diet recalls in the European Prospective Investigation into Cancer and Nutrition (EPIC).

Ferrari P, Slimani N, Ciampi A, Trichopoulou A, Naska A, Lauria C, Veglia F, Bueno-de-Mesquita HB, Ocké MC, Brustad M, Braaten T, José Tormo M, Amiano P, Mattisson I, Johansson G, Welch A, Davey G, Overvad K, Tjønneland A, Clavel-Chapelon F, Thiebaut A, Linseisen J, Boeing H, Hemon B, Riboli E.

Public Health Nutr. 2002 Dec;5(6B):1329-45.

PMID:
12639236
7.

Comparative study of seven commercial kits for human DNA extraction from urine samples suitable for DNA biomarker-based public health studies.

El Bali L, Diman A, Bernard A, Roosens NH, De Keersmaecker SC.

J Biomol Tech. 2014 Dec;25(4):96-110. doi: 10.7171/jbt.14-2504-002.

8.

The UK Biobank sample handling and storage protocol for the collection, processing and archiving of human blood and urine.

Elliott P, Peakman TC; UK Biobank.

Int J Epidemiol. 2008 Apr;37(2):234-44. doi: 10.1093/ije/dym276.

PMID:
18381398
9.

Bulky DNA adducts, 4-aminobiphenyl-haemoglobin adducts and diet in the European Prospective Investigation into Cancer and Nutrition (EPIC) prospective study.

Peluso M, Airoldi L, Munnia A, Colombi A, Veglia F, Autrup H, Dunning A, Garte S, Gormally E, Malaveille C, Matullo G, Overvad K, Raaschou-Nielsen O, Clavel-Chapelon F, Linseisen J, Boeing H, Trichopoulou A, Palli D, Krogh V, Tumino R, Panico S, Bueno-De-Mesquita BH, Peeters PH, Kumle M, Agudo A, Martinez C, Dorronsoro M, Barricarte A, Tormo MJ, Quiros JR, Berglund G, Jarvholm B, Day NE, Key TJ, Saracci R, Kaaks R, Riboli E, Bingham S, Vineis P.

Br J Nutr. 2008 Sep;100(3):489-95. doi: 10.1017/S0007114508911600. Epub 2008 Feb 14.

10.

Benefits of a comprehensive quality program for cryopreserved PBMC covering 28 clinical trials sites utilizing an integrated, analytical web-based portal.

Ducar C, Smith D, Pinzon C, Stirewalt M, Cooper C, McElrath MJ, Hural J; NIAID HIV Vaccine Trials Network.

J Immunol Methods. 2014 Jul;409:9-20. doi: 10.1016/j.jim.2014.03.024. Epub 2014 Apr 4.

11.

Successful genome-wide scan in paired blood and buccal samples.

Feigelson HS, Rodriguez C, Welch R, Hutchinson A, Shao W, Jacobs K, Diver WR, Calle EE, Thun MJ, Hunter DJ, Thomas G, Chanock SJ.

Cancer Epidemiol Biomarkers Prev. 2007 May;16(5):1023-5.

12.

European Prospective Investigation into Cancer and Nutrition (EPIC): study populations and data collection.

Riboli E, Hunt KJ, Slimani N, Ferrari P, Norat T, Fahey M, Charrondière UR, Hémon B, Casagrande C, Vignat J, Overvad K, Tjønneland A, Clavel-Chapelon F, Thiébaut A, Wahrendorf J, Boeing H, Trichopoulos D, Trichopoulou A, Vineis P, Palli D, Bueno-De-Mesquita HB, Peeters PH, Lund E, Engeset D, González CA, Barricarte A, Berglund G, Hallmans G, Day NE, Key TJ, Kaaks R, Saracci R.

Public Health Nutr. 2002 Dec;5(6B):1113-24.

PMID:
12639222
13.
14.

A U-shaped relationship between plasma folate and pancreatic cancer risk in the European Prospective Investigation into Cancer and Nutrition.

Chuang SC, Stolzenberg-Solomon R, Ueland PM, Vollset SE, Midttun Ø, Olsen A, Tjønneland A, Overvad K, Boutron-Ruault MC, Morois S, Clavel-Chapelon F, Teucher B, Kaaks R, Weikert C, Boeing H, Trichopoulou A, Benetou V, Naska A, Jenab M, Slimani N, Romieu I, Michaud DS, Palli D, Sieri S, Panico S, Sacerdote C, Tumino R, Skeie G, Duell EJ, Rodriguez L, Molina-Montes E, Huerta JM, Larrañaga N, Gurrea AB, Johansen D, Manjer J, Ye W, Sund M, Peeters PH, Jeurnink S, Wareham N, Khaw KT, Crowe F, Riboli E, Bueno-de-Mesquita B, Vineis P.

Eur J Cancer. 2011 Aug;47(12):1808-16. doi: 10.1016/j.ejca.2011.02.007. Epub 2011 Mar 14.

15.

SPIDIA-RNA: first external quality assessment for the pre-analytical phase of blood samples used for RNA based analyses.

Pazzagli M, Malentacchi F, Simi L, Orlando C, Wyrich R, Günther K, Hartmann CC, Verderio P, Pizzamiglio S, Ciniselli CM, Tichopad A, Kubista M, Gelmini S.

Methods. 2013 Jan;59(1):20-31. doi: 10.1016/j.ymeth.2012.10.007. Epub 2012 Oct 27.

PMID:
23110812
16.

The European Prospective Investigation into Cancer and Nutrition biobank.

Hainaut P, Vozar B, Rinaldi S, Riboli E, Caboux E.

Methods Mol Biol. 2011;675:179-91. doi: 10.1007/978-1-59745-423-0_7.

PMID:
20949388
17.

Method Validation for Extraction of Nucleic Acids from Peripheral Whole Blood.

Mathay C, Hamot G, Henry E, Mommaerts K, Thorlaksdottir A, Trouet J, Betsou F.

Biopreserv Biobank. 2016 Dec;14(6):520-529. Epub 2016 Aug 22.

PMID:
27548617
18.

Technical note: Comparative analyses of the quality and yield of genomic DNA from invasive and noninvasive, automated and manual extraction methods.

Foley C, O'Farrelly C, Meade KG.

J Dairy Sci. 2011 Jun;94(6):3159-65. doi: 10.3168/jds.2010-3987.

PMID:
21605785
19.

Collection of genomic DNA from adults in epidemiological studies by buccal cytobrush and mouthwash.

García-Closas M, Egan KM, Abruzzo J, Newcomb PA, Titus-Ernstoff L, Franklin T, Bender PK, Beck JC, Le Marchand L, Lum A, Alavanja M, Hayes RB, Rutter J, Buetow K, Brinton LA, Rothman N.

Cancer Epidemiol Biomarkers Prev. 2001 Jun;10(6):687-96.

20.

Quantification of mitochondrial DNA copy number: pre-analytical factors.

Andreu AL, Martinez R, Marti R, García-Arumí E.

Mitochondrion. 2009 Jul;9(4):242-6. doi: 10.1016/j.mito.2009.02.006. Epub 2009 Mar 9.

PMID:
19272467

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