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Items: 1 to 20 of 105

1.

HuPho: the human phosphatase portal.

Liberti S, Sacco F, Calderone A, Perfetto L, Iannuccelli M, Panni S, Santonico E, Palma A, Nardozza AP, Castagnoli L, Cesareni G.

FEBS J. 2013 Jan;280(2):379-87. doi: 10.1111/j.1742-4658.2012.08712.x. Epub 2012 Aug 24.

2.

The human DEPhOsphorylation database DEPOD: a 2015 update.

Duan G, Li X, Köhn M.

Nucleic Acids Res. 2015 Jan;43(Database issue):D531-5. doi: 10.1093/nar/gku1009. Epub 2014 Oct 20.

3.

Genome wide in silico analysis of Plasmodium falciparum phosphatome.

Pandey R, Mohmmed A, Pierrot C, Khalife J, Malhotra P, Gupta D.

BMC Genomics. 2014 Nov 25;15:1024. doi: 10.1186/1471-2164-15-1024.

4.

Elucidating human phosphatase-substrate networks.

Li X, Wilmanns M, Thornton J, Köhn M.

Sci Signal. 2013 May 14;6(275):rs10. doi: 10.1126/scisignal.2003203.

PMID:
23674824
5.

PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.

Forrest AR, Taylor DF, Fink JL, Gongora MM, Flegg C, Teasdale RD, Suzuki H, Kanamori M, Kai C, Hayashizaki Y, Grimmond SM.

BMC Bioinformatics. 2006 Feb 20;7:82.

6.

The human phosphatase interactome: An intricate family portrait.

Sacco F, Perfetto L, Castagnoli L, Cesareni G.

FEBS Lett. 2012 Aug 14;586(17):2732-9. doi: 10.1016/j.febslet.2012.05.008. Epub 2012 May 21. Review.

7.

Constructing ontology-driven protein family databases.

Wolstencroft K, McEntire R, Stevens R, Tabernero L, Brass A.

Bioinformatics. 2005 Apr 15;21(8):1685-92. Epub 2004 Nov 25.

PMID:
15564301
8.

The comprehensive microbial resource.

Davidsen T, Beck E, Ganapathy A, Montgomery R, Zafar N, Yang Q, Madupu R, Goetz P, Galinsky K, White O, Sutton G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D340-5. doi: 10.1093/nar/gkp912. Epub 2009 Nov 5.

9.

Useful Web Resources.

Bui A, Person MD.

Adv Exp Med Biol. 2016;919:249-253. Review.

PMID:
27975223
10.

Protein kinase resource: an integrated environment for phosphorylation research.

Niedner RH, Buzko OV, Haste NM, Taylor A, Gribskov M, Taylor SS.

Proteins. 2006 Apr 1;63(1):78-86.

PMID:
16435372
11.

Human protein reference database as a discovery resource for proteomics.

Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D497-501.

12.

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.

Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH.

Database (Oxford). 2014 Aug 13;2014. pii: bau081. doi: 10.1093/database/bau081. Print 2014.

13.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

14.

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.

15.

FragKB: structural and literature annotation resource of conserved peptide fragments and residues.

Tendulkar AV, Krallinger M, de la Torre V, López G, Wangikar PP, Valencia A.

PLoS One. 2010 Mar 18;5(3):e9679. doi: 10.1371/journal.pone.0009679.

16.

DEPD: a novel database for differentially expressed proteins.

He QY, Cao J, Liu XH, Li MX, Liu YS, Xie JY, Liang SP.

Bioinformatics. 2005 Sep 15;21(18):3694-6. Epub 2005 Jul 14.

PMID:
16020467
17.

MINT, the molecular interaction database: 2009 update.

Ceol A, Chatr Aryamontri A, Licata L, Peluso D, Briganti L, Perfetto L, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D532-9. doi: 10.1093/nar/gkp983. Epub 2009 Nov 6.

18.

A summary of computational resources for protein phosphorylation.

Xue Y, Gao X, Cao J, Liu Z, Jin C, Wen L, Yao X, Ren J.

Curr Protein Pept Sci. 2010 Sep;11(6):485-96. Review.

PMID:
20491621
19.

Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.

20.

Structural biology of glucan phosphatases from humans to plants.

Gentry MS, Brewer MK, Vander Kooi CW.

Curr Opin Struct Biol. 2016 Oct;40:62-69. doi: 10.1016/j.sbi.2016.07.015. Epub 2016 Aug 4. Review.

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