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Items: 1 to 20 of 130

1.

Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.

Loper JE, Hassan KA, Mavrodi DV, Davis EW 2nd, Lim CK, Shaffer BT, Elbourne LD, Stockwell VO, Hartney SL, Breakwell K, Henkels MD, Tetu SG, Rangel LI, Kidarsa TA, Wilson NL, van de Mortel JE, Song C, Blumhagen R, Radune D, Hostetler JB, Brinkac LM, Durkin AS, Kluepfel DA, Wechter WP, Anderson AJ, Kim YC, Pierson LS 3rd, Pierson EA, Lindow SE, Kobayashi DY, Raaijmakers JM, Weller DM, Thomashow LS, Allen AE, Paulsen IT.

PLoS Genet. 2012 Jul;8(7):e1002784. doi: 10.1371/journal.pgen.1002784. Epub 2012 Jul 5.

2.

Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction.

Redondo-Nieto M, Barret M, Morrissey J, Germaine K, Martínez-Granero F, Barahona E, Navazo A, Sánchez-Contreras M, Moynihan JA, Muriel C, Dowling D, O'Gara F, Martín M, Rivilla R.

BMC Genomics. 2013 Jan 25;14:54. doi: 10.1186/1471-2164-14-54.

3.

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.

Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, Challis GL, Yaxley AM, Harris D, Seeger K, Murphy L, Rutter S, Squares R, Quail MA, Saunders E, Mavromatis K, Brettin TS, Bentley SD, Hothersall J, Stephens E, Thomas CM, Parkhill J, Levy SB, Rainey PB, Thomson NR.

Genome Biol. 2009;10(5):R51. doi: 10.1186/gb-2009-10-5-r51. Epub 2009 May 11.

4.

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

Paulsen IT, Press CM, Ravel J, Kobayashi DY, Myers GS, Mavrodi DV, DeBoy RT, Seshadri R, Ren Q, Madupu R, Dodson RJ, Durkin AS, Brinkac LM, Daugherty SC, Sullivan SA, Rosovitz MJ, Gwinn ML, Zhou L, Schneider DJ, Cartinhour SW, Nelson WC, Weidman J, Watkins K, Tran K, Khouri H, Pierson EA, Pierson LS 3rd, Thomashow LS, Loper JE.

Nat Biotechnol. 2005 Jul;23(7):873-8. Epub 2005 Jun 26. Erratum in: Nat Biotechnol. 2006 Apr;24(4):466.

PMID:
15980861
5.

Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex.

Garrido-Sanz D, Meier-Kolthoff JP, Göker M, Martín M, Rivilla R, Redondo-Nieto M.

PLoS One. 2016 Feb 25;11(2):e0150183. doi: 10.1371/journal.pone.0150183. eCollection 2016. Erratum in: PLoS One. 2016;11(4):e0153733.

6.

Comparative genomics of multiple strains of Pseudomonas cannabina pv. alisalensis, a potential model pathogen of both monocots and dicots.

Sarris PF, Trantas EA, Baltrus DA, Bull CT, Wechter WP, Yan S, Ververidis F, Almeida NF, Jones CD, Dangl JL, Panopoulos NJ, Vinatzer BA, Goumas DE.

PLoS One. 2013;8(3):e59366. doi: 10.1371/journal.pone.0059366. Epub 2013 Mar 28.

7.

Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs.

Scales BS, Erb-Downward JR, Huffnagle IM, LiPuma JJ, Huffnagle GB.

BMC Genomics. 2015 Dec 7;16:1032. doi: 10.1186/s12864-015-2261-2.

8.

An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6.

Kimbrel JA, Givan SA, Halgren AB, Creason AL, Mills DI, Banowetz GM, Armstrong DJ, Chang JH.

BMC Genomics. 2010 Sep 28;11:522. doi: 10.1186/1471-2164-11-522.

9.

Comparative Genomic Analysis of Pseudomonas chlororaphis PCL1606 Reveals New Insight into Antifungal Compounds Involved in Biocontrol.

Calderón CE, Ramos C, de Vicente A, Cazorla FM.

Mol Plant Microbe Interact. 2015 Mar;28(3):249-60. doi: 10.1094/MPMI-10-14-0326-FI.

10.

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis.

Jun SR, Wassenaar TM, Nookaew I, Hauser L, Wanchai V, Land M, Timm CM, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA, Ussery DW.

Appl Environ Microbiol. 2015 Oct 30;82(1):375-83. doi: 10.1128/AEM.02612-15.

11.

Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots.

Marchi M, Boutin M, Gazengel K, Rispe C, Gauthier JP, Guillerm-Erckelboudt AY, Lebreton L, Barret M, Daval S, Sarniguet A.

Environ Microbiol Rep. 2013 Jun;5(3):393-403. doi: 10.1111/1758-2229.12048. Epub 2013 Apr 10.

PMID:
23754720
12.

Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5.

Mavrodi DV, Loper JE, Paulsen IT, Thomashow LS.

BMC Microbiol. 2009 Jan 13;9:8. doi: 10.1186/1471-2180-9-8.

13.

Evolutionary history of the phl gene cluster in the plant-associated bacterium Pseudomonas fluorescens.

Moynihan JA, Morrissey JP, Coppoolse ER, Stiekema WJ, O'Gara F, Boyd EF.

Appl Environ Microbiol. 2009 Apr;75(7):2122-31. doi: 10.1128/AEM.02052-08. Epub 2009 Jan 30.

14.

Genome Analysis of Pseudomonas fluorescens PCL1751: A Rhizobacterium that Controls Root Diseases and Alleviates Salt Stress for Its Plant Host.

Cho ST, Chang HH, Egamberdieva D, Kamilova F, Lugtenberg B, Kuo CH.

PLoS One. 2015 Oct 9;10(10):e0140231. doi: 10.1371/journal.pone.0140231. eCollection 2015.

15.
16.

Molecular analysis of a novel gene cluster encoding an insect toxin in plant-associated strains of Pseudomonas fluorescens.

Péchy-Tarr M, Bruck DJ, Maurhofer M, Fischer E, Vogne C, Henkels MD, Donahue KM, Grunder J, Loper JE, Keel C.

Environ Microbiol. 2008 Sep;10(9):2368-86. doi: 10.1111/j.1462-2920.2008.01662.x. Epub 2008 May 14.

PMID:
18484997
17.

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.

Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, Ferriera S, Fuerstenberg SI, Gachon CM, Gaulin E, Govers F, Grenville-Briggs L, Horner N, Hostetler J, Jiang RH, Johnson J, Krajaejun T, Lin H, Meijer HJ, Moore B, Morris P, Phuntmart V, Puiu D, Shetty J, Stajich JE, Tripathy S, Wawra S, van West P, Whitty BR, Coutinho PM, Henrissat B, Martin F, Thomas PD, Tyler BM, De Vries RP, Kamoun S, Yandell M, Tisserat N, Buell CR.

Genome Biol. 2010;11(7):R73. doi: 10.1186/gb-2010-11-7-r73. Epub 2010 Jul 13.

18.

The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract.

Wegmann U, MacKenzie DA, Zheng J, Goesmann A, Roos S, Swarbreck D, Walter J, Crossman LC, Juge N.

BMC Genomics. 2015 Dec 1;16:1023. doi: 10.1186/s12864-015-2216-7.

19.

Evolution of REP diversity: a comparative study.

Nunvar J, Licha I, Schneider B.

BMC Genomics. 2013 Jun 10;14:385. doi: 10.1186/1471-2164-14-385.

20.

Type III secretion system and virulence markers highlight similarities and differences between human- and plant-associated pseudomonads related to Pseudomonas fluorescens and P. putida.

Mazurier S, Merieau A, Bergeau D, Decoin V, Sperandio D, Crépin A, Barbey C, Jeannot K, Vicré-Gibouin M, Plésiat P, Lemanceau P, Latour X.

Appl Environ Microbiol. 2015 Apr;81(7):2579-90. doi: 10.1128/AEM.04160-14. Epub 2015 Jan 30.

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