Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 79

1.

Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.

Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.

Mol Cell Proteomics. 2012 Dec;11(12):1578-85. doi: 10.1074/mcp.M112.017905. Epub 2012 Jul 11.

2.

A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.

Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.

Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. doi: 10.1074/mcp.M111.013284. Epub 2011 Sep 1.

3.

Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.

Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.

J Proteome Res. 2012 Feb 3;11(2):796-807. doi: 10.1021/pr200668y. Epub 2011 Nov 23.

PMID:
22053931
4.

Advances in characterizing ubiquitylation sites by mass spectrometry.

Sylvestersen KB, Young C, Nielsen ML.

Curr Opin Chem Biol. 2013 Feb;17(1):49-58. doi: 10.1016/j.cbpa.2012.12.009. Epub 2013 Jan 5. Review.

PMID:
23298953
5.

Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites.

Chen X, Qiu JD, Shi SP, Suo SB, Huang SY, Liang RP.

Bioinformatics. 2013 Jul 1;29(13):1614-22. doi: 10.1093/bioinformatics/btt196. Epub 2013 Apr 26.

PMID:
23626001
6.

Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.

Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML.

Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. doi: 10.1074/mcp.M110.003590. Epub 2010 Dec 7.

7.

Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis.

Kim DY, Scalf M, Smith LM, Vierstra RD.

Plant Cell. 2013 May;25(5):1523-40. doi: 10.1105/tpc.112.108613. Epub 2013 May 10.

8.

Regulatory functions of ubiquitin in diverse DNA damage responses.

Ramaekers CH, Wouters BG.

Curr Mol Med. 2011 Mar;11(2):152-69. Review.

PMID:
21342128
9.

Systematic and quantitative assessment of the ubiquitin-modified proteome.

Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.

Mol Cell. 2011 Oct 21;44(2):325-40. doi: 10.1016/j.molcel.2011.08.025. Epub 2011 Sep 8.

10.

Using the ubiquitin-modified proteome to monitor protein homeostasis function.

Carrano AC, Bennett EJ.

Mol Cell Proteomics. 2013 Dec;12(12):3521-31. doi: 10.1074/mcp.R113.029744. Epub 2013 May 23.

11.

Characterization of the ubiquitin-modified proteome regulated by transient forebrain ischemia.

Iwabuchi M, Sheng H, Thompson JW, Wang L, Dubois LG, Gooden D, Moseley M, Paschen W, Yang W.

J Cereb Blood Flow Metab. 2014 Mar;34(3):425-32. doi: 10.1038/jcbfm.2013.210. Epub 2013 Dec 4.

12.

Gains of ubiquitylation sites in highly conserved proteins in the human lineage.

Kim DS, Hahn Y.

BMC Bioinformatics. 2012 Nov 17;13:306. doi: 10.1186/1471-2105-13-306.

13.

Improving bioorthogonal protein ubiquitylation by click reaction.

Schneider D, Schneider T, Rösner D, Scheffner M, Marx A.

Bioorg Med Chem. 2013 Jun 15;21(12):3430-5. doi: 10.1016/j.bmc.2013.03.063. Epub 2013 Apr 3.

PMID:
23611767
14.

Large-scale analysis of the human ubiquitin-related proteome.

Matsumoto M, Hatakeyama S, Oyamada K, Oda Y, Nishimura T, Nakayama KI.

Proteomics. 2005 Nov;5(16):4145-51.

PMID:
16196087
15.

Unraveling the ubiquitin-regulated signaling networks by mass spectrometry-based proteomics.

Low TY, Magliozzi R, Guardavaccaro D, Heck AJ.

Proteomics. 2013 Feb;13(3-4):526-37. doi: 10.1002/pmic.201200244. Epub 2012 Nov 26. Review.

PMID:
23019148
16.

UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines.

Huang CH, Su MG, Kao HJ, Jhong JH, Weng SL, Lee TY.

BMC Syst Biol. 2016 Jan 11;10 Suppl 1:6. doi: 10.1186/s12918-015-0246-z.

17.

Proteomic analysis of ubiquitinated proteins in normal hepatocyte cell line Chang liver cells.

Tan F, Lu L, Cai Y, Wang J, Xie Y, Wang L, Gong Y, Xu BE, Wu J, Luo Y, Qiang B, Yuan J, Sun X, Peng X.

Proteomics. 2008 Jul;8(14):2885-96. doi: 10.1002/pmic.200700887.

PMID:
18655026
18.

Deciphering tissue-specific ubiquitylation by mass spectrometry.

Mayor U, Peng J.

Methods Mol Biol. 2012;832:65-80. doi: 10.1007/978-1-61779-474-2_3.

19.

New Insights Into the Role of Ubiquitylation of Proteins.

McDowell GS, Philpott A.

Int Rev Cell Mol Biol. 2016;325:35-88. doi: 10.1016/bs.ircmb.2016.02.002. Epub 2016 Mar 8. Review.

PMID:
27241218
20.

Immunoaffinity enrichment coupled to quantitative mass spectrometry reveals ubiquitin-mediated signaling events.

Yu K, Phu L, Varfolomeev E, Bustos D, Vucic D, Kirkpatrick DS.

J Mol Biol. 2015 Jun 5;427(11):2121-34. doi: 10.1016/j.jmb.2015.03.018. Epub 2015 Apr 8.

PMID:
25861760

Supplemental Content

Support Center