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Items: 1 to 20 of 83

1.

BioNLP Shared Task--The Bacteria Track.

Bossy R, Jourde J, Manine AP, Veber P, Alphonse E, van de Guchte M, Bessières P, Nédellec C.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S3. doi: 10.1186/1471-2105-13-S11-S3.

2.

Overview of the gene regulation network and the bacteria biotope tasks in BioNLP'13 shared task.

Bossy R, Golik W, Ratkovic Z, Valsamou D, Bessières P, Nédellec C.

BMC Bioinformatics. 2015;16 Suppl 10:S1. doi: 10.1186/1471-2105-16-S10-S1. Epub 2015 Jul 13.

3.

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011.

Pyysalo S, Ohta T, Rak R, Sullivan D, Mao C, Wang C, Sobral B, Tsujii J, Ananiadou S.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S2. doi: 10.1186/1471-2105-13-S11-S2.

4.

The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011.

Kim JD, Nguyen N, Wang Y, Tsujii J, Takagi T, Yonezawa A.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S1. doi: 10.1186/1471-2105-13-S11-S1.

5.

The contribution of co-reference resolution to supervised relation detection between bacteria and biotopes entities.

Lavergne T, Grouin C, Zweigenbaum P.

BMC Bioinformatics. 2015;16 Suppl 10:S6. doi: 10.1186/1471-2105-16-S10-S6. Epub 2015 Jul 13.

6.

Detection and categorization of bacteria habitats using shallow linguistic analysis.

Karadeniz İ, Özgür A.

BMC Bioinformatics. 2015;16 Suppl 10:S5. doi: 10.1186/1471-2105-16-S10-S5. Epub 2015 Jul 13.

7.

University of Turku in the BioNLP'11 Shared Task.

Björne J, Ginter F, Salakoski T.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S4. doi: 10.1186/1471-2105-13-S11-S4.

8.

Event extraction of bacteria biotopes: a knowledge-intensive NLP-based approach.

Ratkovic Z, Golik W, Warnier P.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S8. doi: 10.1186/1471-2105-13-S11-S8.

9.

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3. doi: 10.1186/1471-2105-12-S8-S3.

10.

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. doi: 10.1186/gb-2008-9-s2-s1. Epub 2008 Sep 1.

11.

Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.

Pyysalo S, Ohta T, Rak R, Rowley A, Chun HW, Jung SJ, Choi SP, Tsujii J, Ananiadou S.

BMC Bioinformatics. 2015;16 Suppl 10:S2. doi: 10.1186/1471-2105-16-S10-S2. Epub 2015 Jul 13.

12.

Biological event composition.

Kilicoglu H, Bergler S.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S7. doi: 10.1186/1471-2105-13-S11-S7.

13.

Overview of the protein-protein interaction annotation extraction task of BioCreative II.

Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S4. doi: 10.1186/gb-2008-9-s2-s4. Epub 2008 Sep 1.

14.

Improving protein coreference resolution by simple semantic classification.

Nguyen N, Kim JD, Miwa M, Matsuzaki T, Tsujii J.

BMC Bioinformatics. 2012 Nov 17;13:304. doi: 10.1186/1471-2105-13-304.

15.

Adaptable, high recall, event extraction system with minimal configuration.

Miwa M, Ananiadou S.

BMC Bioinformatics. 2015;16 Suppl 10:S7. doi: 10.1186/1471-2105-16-S10-S7. Epub 2015 Jul 13.

16.

Two learning approaches for protein name extraction.

Tatar S, Cicekli I.

J Biomed Inform. 2009 Dec;42(6):1046-55. doi: 10.1016/j.jbi.2009.05.004. Epub 2009 May 13.

17.

OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.

Hunter L, Lu Z, Firby J, Baumgartner WA Jr, Johnson HL, Ogren PV, Cohen KB.

BMC Bioinformatics. 2008 Jan 31;9:78. doi: 10.1186/1471-2105-9-78.

18.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

19.

Optimizing graph-based patterns to extract biomedical events from the literature.

Liu H, Verspoor K, Comeau DC, MacKinlay AD, Wilbur W.

BMC Bioinformatics. 2015;16 Suppl 16:S2. doi: 10.1186/1471-2105-16-S16-S2. Epub 2015 Oct 30.

20.

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