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Items: 1 to 20 of 647

1.

Efficient and accurate Greedy Search Methods for mining functional modules in protein interaction networks.

He J, Li C, Ye B, Zhong W.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S19. doi: 10.1186/1471-2105-13-S10-S19.

2.

Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data.

Li M, Wu X, Wang J, Pan Y.

BMC Bioinformatics. 2012 May 23;13:109. doi: 10.1186/1471-2105-13-109.

3.

A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification.

Yu L, Gao L, Li K, Zhao Y, Chiu DK.

Comput Biol Chem. 2011 Oct 12;35(5):298-307. doi: 10.1016/j.compbiolchem.2011.07.005.

PMID:
22000801
4.

Mining Dense Overlapping Subgraphs in weighted protein-protein interaction networks.

Lee AJ, Lin MC, Hsu CM.

Biosystems. 2011 Mar;103(3):392-9. doi: 10.1016/j.biosystems.2010.11.010.

PMID:
21095218
5.

Identification of functional modules in a PPI network by bounded diameter clustering.

Sohaee N, Forst CV.

J Bioinform Comput Biol. 2010 Dec;8(6):929-43.

PMID:
21121019
6.

Detection of functional modules from protein interaction networks with an enhanced random walk based algorithm.

Cai B, Wang H, Zheng H, Wang H.

Int J Comput Biol Drug Des. 2011;4(3):290-306. doi: 10.1504/IJCBDD.2011.041416.

PMID:
21778561
7.

MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure.

Srihari S, Ning K, Leong HW.

BMC Bioinformatics. 2010 Oct 12;11:504. doi: 10.1186/1471-2105-11-504.

8.

A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks.

Wang J, Li M, Chen J, Pan Y.

IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):607-20. doi: 10.1109/TCBB.2010.75.

PMID:
20733244
9.

An novel frequent probability pattern mining algorithm based on circuit simulation method in uncertain biological networks.

He J, Wang C, Qiu K, Zhong W.

BMC Syst Biol. 2014;8 Suppl 3:S6. doi: 10.1186/1752-0509-8-S3-S6.

10.

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.

Cho YR, Zhang A.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S3. doi: 10.1186/1471-2105-11-S3-S3.

11.

Identification of hierarchical and overlapping functional modules in PPI networks.

Wang J, Ren J, Li M, Wu FX.

IEEE Trans Nanobioscience. 2012 Dec;11(4):386-93. doi: 10.1109/TNB.2012.2210907.

PMID:
22955967
12.

A novel subgradient-based optimization algorithm for blockmodel functional module identification.

Wang Y, Qian X.

BMC Bioinformatics. 2013;14 Suppl 2:S23. doi: 10.1186/1471-2105-14-S2-S23.

13.

Identification of functional modules in a PPI network by clique percolation clustering.

Zhang S, Ning X, Zhang XS.

Comput Biol Chem. 2006 Dec;30(6):445-51.

PMID:
17098476
14.

A hybrid clustering algorithm for identifying modules in Protein-Protein Interaction networks.

Yu L, Gao L, Sun PG.

Int J Data Min Bioinform. 2010;4(5):600-15.

PMID:
21133044
15.

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

BMC Bioinformatics. 2006 Apr 14;7:207.

16.

Functional module identification in protein interaction networks by interaction patterns.

Wang Y, Qian X.

Bioinformatics. 2014 Jan 1;30(1):81-93. doi: 10.1093/bioinformatics/btt569.

17.

Detection of protein complexes from affinity purification/mass spectrometry data.

Cai B, Wang H, Zheng H, Wang H.

BMC Syst Biol. 2012;6 Suppl 3:S4. doi: 10.1186/1752-0509-6-S3-S4.

18.

Discovering protein complexes in protein interaction networks via exploring the weak ties effect.

Ma X, Gao L.

BMC Syst Biol. 2012;6 Suppl 1:S6. doi: 10.1186/1752-0509-6-S1-S6.

19.

Supervised maximum-likelihood weighting of composite protein networks for complex prediction.

Yong CH, Liu G, Chua HN, Wong L.

BMC Syst Biol. 2012;6 Suppl 2:S13. doi: 10.1186/1752-0509-6-S2-S13.

20.

A methodology for detecting the orthology signal in a PPI network at a functional complex level.

Jancura P, Mavridou E, Carrillo-de Santa Pau E, Marchiori E.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S18. doi: 10.1186/1471-2105-13-S10-S18.

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