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Items: 1 to 20 of 72

1.

Protein interactions with piALU RNA indicates putative participation of retroRNA in the cell cycle, DNA repair and chromatin assembly.

Blackwell BJ, Lopez MF, Wang J, Krastins B, Sarracino D, Tollervey JR, Dobke M, Jordan IK, Lunyak VV.

Mob Genet Elements. 2012 Jan 1;2(1):26-35.

2.

Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing.

Le Thomas A, Stuwe E, Li S, Du J, Marinov G, Rozhkov N, Chen YC, Luo Y, Sachidanandam R, Toth KF, Patel D, Aravin AA.

Genes Dev. 2014 Aug 1;28(15):1667-80. doi: 10.1101/gad.245514.114.

3.

A human Alu RNA-binding protein whose expression is associated with accumulation of small cytoplasmic Alu RNA.

Chang DY, Nelson B, Bilyeu T, Hsu K, Darlington GJ, Maraia RJ.

Mol Cell Biol. 1994 Jun;14(6):3949-59.

4.

Cell cycle regulation of human DNA repair and chromatin remodeling genes.

Mjelle R, Hegre SA, Aas PA, Slupphaug G, Drabløs F, Saetrom P, Krokan HE.

DNA Repair (Amst). 2015 Jun;30:53-67. doi: 10.1016/j.dnarep.2015.03.007. Epub 2015 Mar 28.

5.

piRNA production requires heterochromatin formation in Drosophila.

Rangan P, Malone CD, Navarro C, Newbold SP, Hayes PS, Sachidanandam R, Hannon GJ, Lehmann R.

Curr Biol. 2011 Aug 23;21(16):1373-9. doi: 10.1016/j.cub.2011.06.057. Epub 2011 Aug 4.

6.

Do human transposable element small RNAs serve primarily as genome defenders or genome regulators?

Lee KJ, Conley AB, Lunyak VV, Jordan IK.

Mob Genet Elements. 2012 Jan 1;2(1):19-25.

7.

[RNA responsible for conferring a DNase I sensitive structure on albumin gene in assembled chromatin].

Lv ZJ, Wang XF, Zhai Y, Song SX.

Yi Chuan. 2003 Jan;25(1):30-6. Chinese.

PMID:
15639815
8.

Chromatin isolation by RNA purification (ChIRP).

Chu C, Quinn J, Chang HY.

J Vis Exp. 2012 Mar 25;(61). pii: 3912. doi: 10.3791/3912.

9.

piRNA-mediated transgenerational inheritance of an acquired trait.

Grentzinger T, Armenise C, Brun C, Mugat B, Serrano V, Pelisson A, Chambeyron S.

Genome Res. 2012 Oct;22(10):1877-88. doi: 10.1101/gr.136614.111. Epub 2012 May 3.

10.

Impact of Alu repeats on the evolution of human p53 binding sites.

Cui F, Sirotin MV, Zhurkin VB.

Biol Direct. 2011 Jan 6;6:2. doi: 10.1186/1745-6150-6-2.

11.

Enrichment analysis of Alu elements with different spatial chromatin proximity in the human genome.

Gu Z, Jin K, Crabbe MJ, Zhang Y, Liu X, Huang Y, Hua M, Nan P, Zhang Z, Zhong Y.

Protein Cell. 2016 Apr;7(4):250-66. doi: 10.1007/s13238-015-0240-7. Epub 2016 Feb 10.

12.
13.

piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.

Han BW, Wang W, Zamore PD, Weng Z.

Bioinformatics. 2015 Feb 15;31(4):593-5. doi: 10.1093/bioinformatics/btu647. Epub 2014 Oct 17.

14.

piRNA clusters as a main source of small RNAs in the animal germline.

Olovnikov IA, Kalmykova AI.

Biochemistry (Mosc). 2013 Jun;78(6):572-84. doi: 10.1134/S0006297913060035. Review.

15.

How many antiviral small interfering RNAs may be encoded by the mammalian genomes?

Zabolotneva A, Tkachev V, Filatov F, Buzdin A.

Biol Direct. 2010 Nov 8;5:62. doi: 10.1186/1745-6150-5-62.

17.

Transposable-element associated small RNAs in Bombyx mori genome.

Cai Y, Zhou Q, Yu C, Wang X, Hu S, Yu J, Yu X.

PLoS One. 2012;7(5):e36599. doi: 10.1371/journal.pone.0036599. Epub 2012 May 8.

18.

The emerging role of nuclear architecture in DNA repair and genome maintenance.

Misteli T, Soutoglou E.

Nat Rev Mol Cell Biol. 2009 Apr;10(4):243-54. doi: 10.1038/nrm2651. Epub 2009 Mar 11. Review.

19.

A cellular protein binds B1 and Alu small cytoplasmic RNAs in vitro.

Chang DY, Maraia RJ.

J Biol Chem. 1993 Mar 25;268(9):6423-8.

20.

Alu RNA secondary structure consists of two independent 7 SL RNA-like folding units.

Sinnett D, Richer C, Deragon JM, Labuda D.

J Biol Chem. 1991 May 15;266(14):8675-8.

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