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Items: 1 to 20 of 211


Genes2FANs: connecting genes through functional association networks.

Dannenfelser R, Clark NR, Ma'ayan A.

BMC Bioinformatics. 2012 Jul 2;13:156. doi: 10.1186/1471-2105-13-156.


Lists2Networks: integrated analysis of gene/protein lists.

Lachmann A, Ma'ayan A.

BMC Bioinformatics. 2010 Feb 12;11:87. doi: 10.1186/1471-2105-11-87.


STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data.

Jupiter D, Chen H, VanBuren V.

BMC Bioinformatics. 2009 Oct 14;10:332. doi: 10.1186/1471-2105-10-332.


Wiki-pi: a web-server of annotated human protein-protein interactions to aid in discovery of protein function.

Orii N, Ganapathiraju MK.

PLoS One. 2012;7(11):e49029. doi: 10.1371/journal.pone.0049029. Epub 2012 Nov 28.


ResponseNet2.0: Revealing signaling and regulatory pathways connecting your proteins and genes--now with human data.

Basha O, Tirman S, Eluk A, Yeger-Lotem E.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W198-203. doi: 10.1093/nar/gkt532. Epub 2013 Jun 12.


PPI finder: a mining tool for human protein-protein interactions.

He M, Wang Y, Li W.

PLoS One. 2009;4(2):e4554. doi: 10.1371/journal.pone.0004554. Epub 2009 Feb 23.


SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

Hur J, Schuyler AD, States DJ, Feldman EL.

Bioinformatics. 2009 Mar 15;25(6):838-40. doi: 10.1093/bioinformatics/btp049. Epub 2009 Feb 2.


Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network.

Liu H, Su J, Li J, Liu H, Lv J, Li B, Qiao H, Zhang Y.

BMC Syst Biol. 2011 Oct 11;5:158. doi: 10.1186/1752-0509-5-158.


A protein interaction network associated with asthma.

Hwang S, Son SW, Kim SC, Kim YJ, Jeong H, Lee D.

J Theor Biol. 2008 Jun 21;252(4):722-31. doi: 10.1016/j.jtbi.2008.02.011. Epub 2008 Feb 16.


DroPNet: a web portal for integrated analysis of Drosophila protein-protein interaction networks.

Renaud Y, Baillif A, Perez JB, Agier M, Mephu Nguifo E, Mirouse V.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W134-9. doi: 10.1093/nar/gks434. Epub 2012 May 27.


A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.


Comprehensive transcriptional profiling of prion infection in mouse models reveals networks of responsive genes.

Sorensen G, Medina S, Parchaliuk D, Phillipson C, Robertson C, Booth SA.

BMC Genomics. 2008 Mar 3;9:114. doi: 10.1186/1471-2164-9-114.


DTome: a web-based tool for drug-target interactome construction.

Sun J, Wu Y, Xu H, Zhao Z.

BMC Bioinformatics. 2012 Jun 11;13 Suppl 9:S7. doi: 10.1186/1471-2105-13-S9-S7.


Construction of coffee transcriptome networks based on gene annotation semantics.

Castillo LF, Galeano N, Isaza GA, Gaitán A.

J Integr Bioinform. 2012 Jul 24;9(3):205. doi: 10.2390/biecoll-jib-2012-205.


iBIG: an integrative network tool for supporting human disease mechanism studies.

Sun J, Pan Y, Feng X, Zhang H, Duan Y, Lei H.

Genomics Proteomics Bioinformatics. 2013 Jun;11(3):166-71. doi: 10.1016/j.gpb.2012.08.007. Epub 2013 Jan 4.


InterMitoBase: an annotated database and analysis platform of protein-protein interactions for human mitochondria.

Gu Z, Li J, Gao S, Gong M, Wang J, Xu H, Zhang C, Wang J.

BMC Genomics. 2011 Jun 30;12:335. doi: 10.1186/1471-2164-12-335.


A compendium of human genes regulating feeding behavior and body weight, its functional characterization and identification of GWAS genes involved in brain-specific PPI network.

Ignatieva EV, Afonnikov DA, Saik OV, Rogaev EI, Kolchanov NA.

BMC Genet. 2016 Dec 22;17(Suppl 3):158. doi: 10.1186/s12863-016-0466-2.


HIPPIE: Integrating protein interaction networks with experiment based quality scores.

Schaefer MH, Fontaine JF, Vinayagam A, Porras P, Wanker EE, Andrade-Navarro MA.

PLoS One. 2012;7(2):e31826. doi: 10.1371/journal.pone.0031826. Epub 2012 Feb 14.


Gene Prospector: an evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases.

Yu W, Wulf A, Liu T, Khoury MJ, Gwinn M.

BMC Bioinformatics. 2008 Dec 8;9:528. doi: 10.1186/1471-2105-9-528.

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