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Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes.

Filichkin SA, Mockler TC.

Biol Direct. 2012 Jul 2;7:20. doi: 10.1186/1745-6150-7-20.


Genome-wide mapping of alternative splicing in Arabidopsis thaliana.

Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC.

Genome Res. 2010 Jan;20(1):45-58. doi: 10.1101/gr.093302.109. Epub 2009 Oct 26.


Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.

Alabadí D, Oyama T, Yanovsky MJ, Harmon FG, Más P, Kay SA.

Science. 2001 Aug 3;293(5531):880-3.


Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay.

Palusa SG, Reddy AS.

New Phytol. 2010 Jan;185(1):83-9. doi: 10.1111/j.1469-8137.2009.03065.x. Epub 2009 Oct 23.


Regulation of the circadian clock through pre-mRNA splicing in Arabidopsis.

Cui Z, Xu Q, Wang X.

J Exp Bot. 2014 May;65(8):1973-80. doi: 10.1093/jxb/eru085. Epub 2014 Mar 6. Review.


Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis.

Kwon YJ, Park MJ, Kim SG, Baldwin IT, Park CM.

BMC Plant Biol. 2014 May 19;14:136. doi: 10.1186/1471-2229-14-136.


Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes.

James AB, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JW, Nimmo HG.

Plant Cell. 2012 Mar;24(3):961-81. doi: 10.1105/tpc.111.093948. Epub 2012 Mar 9.


A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis.

Seo PJ, Park MJ, Lim MH, Kim SG, Lee M, Baldwin IT, Park CM.

Plant Cell. 2012 Jun;24(6):2427-42. doi: 10.1105/tpc.112.098723. Epub 2012 Jun 19.


Identification of alternative splicing events regulated by an Arabidopsis serine/arginine-like protein, atSR45a, in response to high-light stress using a tiling array.

Yoshimura K, Mori T, Yokoyama K, Koike Y, Tanabe N, Sato N, Takahashi H, Maruta T, Shigeoka S.

Plant Cell Physiol. 2011 Oct;52(10):1786-805. doi: 10.1093/pcp/pcr115. Epub 2011 Aug 23.


Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis.

Alabadí D, Yanovsky MJ, Más P, Harmer SL, Kay SA.

Curr Biol. 2002 Apr 30;12(9):757-61.


Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis.

Filichkin SA, Cumbie JS, Dharmawardhana P, Jaiswal P, Chang JH, Palusa SG, Reddy AS, Megraw M, Mockler TC.

Mol Plant. 2015 Feb;8(2):207-27. doi: 10.1016/j.molp.2014.10.011. Epub 2015 Jan 8.


SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis.

Wang X, Wu F, Xie Q, Wang H, Wang Y, Yue Y, Gahura O, Ma S, Liu L, Cao Y, Jiao Y, Puta F, McClung CR, Xu X, Ma L.

Plant Cell. 2012 Aug;24(8):3278-95. Epub 2012 Aug 31.


Identification of a PTC-containing DlRan transcript and its differential expression during somatic embryogenesis in Dimocarpus longan.

Fang ZZ, Lai CC, Zhang YL, Lin YL, Lai ZX.

Gene. 2013 Oct 15;529(1):37-44. doi: 10.1016/j.gene.2013.07.091. Epub 2013 Aug 9.


CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis.

Lu SX, Knowles SM, Andronis C, Ong MS, Tobin EM.

Plant Physiol. 2009 Jun;150(2):834-43. doi: 10.1104/pp.108.133272. Epub 2009 Feb 13.


LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis.

Mizoguchi T, Wheatley K, Hanzawa Y, Wright L, Mizoguchi M, Song HR, Carré IA, Coupland G.

Dev Cell. 2002 May;2(5):629-41.


Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.

Schöning JC, Streitner C, Meyer IM, Gao Y, Staiger D.

Nucleic Acids Res. 2008 Dec;36(22):6977-87. doi: 10.1093/nar/gkn847. Epub 2008 Nov 4.


Posttranslational regulation of CIRCADIAN CLOCK ASSOCIATED1 in the circadian oscillator of Arabidopsis.

Yakir E, Hilman D, Kron I, Hassidim M, Melamed-Book N, Green RM.

Plant Physiol. 2009 Jun;150(2):844-57. doi: 10.1104/pp.109.137414. Epub 2009 Apr 1.


Plant serine/arginine-rich proteins: roles in precursor messenger RNA splicing, plant development, and stress responses.

Reddy AS, Shad Ali G.

Wiley Interdiscip Rev RNA. 2011 Nov-Dec;2(6):875-89. doi: 10.1002/wrna.98. Epub 2011 Jul 15. Review.


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