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Items: 1 to 20 of 67

1.

Efficient recovery of whole blood RNA--a comparison of commercial RNA extraction protocols for high-throughput applications in wildlife species.

Schwochow D, Serieys LE, Wayne RK, Thalmann O.

BMC Biotechnol. 2012 Jun 27;12:33. doi: 10.1186/1472-6750-12-33.

2.

Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals.

Gayral P, Weinert L, Chiari Y, Tsagkogeorga G, Ballenghien M, Galtier N.

Mol Ecol Resour. 2011 Jul;11(4):650-61. doi: 10.1111/j.1755-0998.2011.03010.x. Epub 2011 Apr 12.

PMID:
21481219
3.

Variation in RNA-Seq transcriptome profiles of peripheral whole blood from healthy individuals with and without globin depletion.

Shin H, Shannon CP, Fishbane N, Ruan J, Zhou M, Balshaw R, Wilson-McManus JE, Ng RT, McManus BM, Tebbutt SJ; PROOF Centre of Excellence Team..

PLoS One. 2014 Mar 7;9(3):e91041. doi: 10.1371/journal.pone.0091041. eCollection 2014 Mar 7.

4.

Optimizing preservation protocols to extract high-quality RNA from different tissues of echinoderms for next-generation sequencing.

Pérez-Portela R, Riesgo A.

Mol Ecol Resour. 2013 Sep;13(5):884-9. doi: 10.1111/1755-0998.12122. Epub 2013 May 20.

PMID:
23683108
5.

High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus.

Bettencourt R, Pinheiro M, Egas C, Gomes P, Afonso M, Shank T, Santos RS.

BMC Genomics. 2010 Oct 11;11:559. doi: 10.1186/1471-2164-11-559.

6.

Ribosomal RNA depletion for massively parallel bacterial RNA-sequencing applications.

Chen Z, Duan X.

Methods Mol Biol. 2011;733:93-103. doi: 10.1007/978-1-61779-089-8_7.

PMID:
21431765
7.

Construction of RNA-Seq libraries from large and microscopic tissues for the Illumina sequencing platform.

Atamian HS, Kaloshian I.

Methods Mol Biol. 2012;883:47-57. doi: 10.1007/978-1-61779-839-9_3.

PMID:
22589123
8.

Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines.

Ha KC, Lalonde E, Li L, Cavallone L, Natrajan R, Lambros MB, Mitsopoulos C, Hakas J, Kozarewa I, Fenwick K, Lord CJ, Ashworth A, Vincent-Salomon A, Basik M, Reis-Filho JS, Majewski J, Foulkes WD.

BMC Med Genomics. 2011 Oct 27;4:75. doi: 10.1186/1755-8794-4-75.

9.

RNA sequencing and quantitation using the Helicos Genetic Analysis System.

Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.

Methods Mol Biol. 2011;733:37-49. doi: 10.1007/978-1-61779-089-8_3.

PMID:
21431761
10.

Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.

Bräutigam A, Mullick T, Schliesky S, Weber AP.

J Exp Bot. 2011 May;62(9):3093-102. doi: 10.1093/jxb/err029. Epub 2011 Mar 11.

PMID:
21398430
11.

High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing.

Ross EM, Moate PJ, Bath CR, Davidson SE, Sawbridge TI, Guthridge KM, Cocks BG, Hayes BJ.

BMC Genet. 2012 Jul 2;13:53. doi: 10.1186/1471-2156-13-53.

12.

Increased sensitivity of next generation sequencing-based expression profiling after globin reduction in human blood RNA.

Mastrokolias A, den Dunnen JT, van Ommen GB, 't Hoen PA, van Roon-Mom WM.

BMC Genomics. 2012 Jan 18;13:28. doi: 10.1186/1471-2164-13-28.

13.

Application of large-scale sequencing to marker discovery in plants.

Henry RJ, Edwards M, Waters DL, Gopala Krishnan S, Bundock P, Sexton TR, Masouleh AK, Nock CJ, Pattemore J.

J Biosci. 2012 Nov;37(5):829-41. Review.

14.

Transcriptome analysis using RNA-Seq.

Hoeijmakers WA, Bártfai R, Stunnenberg HG.

Methods Mol Biol. 2013;923:221-39.

PMID:
22990781
15.

Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue.

Morlan JD, Qu K, Sinicropi DV.

PLoS One. 2012;7(8):e42882. doi: 10.1371/journal.pone.0042882. Epub 2012 Aug 10.

16.

IQSeq: integrated isoform quantification analysis based on next-generation sequencing.

Du J, Leng J, Habegger L, Sboner A, McDermott D, Gerstein M.

PLoS One. 2012;7(1):e29175. doi: 10.1371/journal.pone.0029175. Epub 2012 Jan 6.

17.

A nonlethal sampling method to obtain, generate and assemble whole blood transcriptomes from small, wild mammals.

Huang Z, Gallot A, Lao NT, Puechmaille SJ, Foley NM, Jebb D, Bekaert M, Teeling EC.

Mol Ecol Resour. 2016 Jan;16(1):150-62. doi: 10.1111/1755-0998.12447. Epub 2015 Aug 4.

PMID:
26186236
18.

Biases in read coverage demonstrated by interlaboratory and interplatform comparison of 117 mRNA and genome sequencing experiments.

Khrameeva EE, Gelfand MS.

BMC Bioinformatics. 2012 Apr 19;13 Suppl 6:S4. doi: 10.1186/1471-2105-13-S6-S4.

19.

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing.

Jeukens J, Renaut S, St-Cyr J, Nolte AW, Bernatchez L.

Mol Ecol. 2010 Dec;19(24):5389-403. doi: 10.1111/j.1365-294X.2010.04934.x. Epub 2010 Nov 19.

PMID:
21087448
20.

Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing.

Kawano M, Kawazu C, Lizio M, Kawaji H, Carninci P, Suzuki H, Hayashizaki Y.

Biotechniques. 2010 Oct;49(4):751-5. doi: 10.2144/000113516.

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