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Linking the transcriptional profiles and the physiological states of Mycobacterium tuberculosis during an extended intracellular infection.

Rohde KH, Veiga DF, Caldwell S, Balázsi G, Russell DG.

PLoS Pathog. 2012;8(6):e1002769. doi: 10.1371/journal.ppat.1002769.


Responses of Mycobacterium tuberculosis hemoglobin promoters to in vitro and in vivo growth conditions.

Pawaria S, Lama A, Raje M, Dikshit KL.

Appl Environ Microbiol. 2008 Jun;74(11):3512-22. doi: 10.1128/AEM.02663-07.


Adjusting to a new home: Mycobacterium tuberculosis gene expression in response to an intracellular lifestyle.

Stokes RW, Waddell SJ.

Future Microbiol. 2009 Dec;4(10):1317-35. doi: 10.2217/fmb.09.94. Review.


Differential transcriptional response in macrophages infected with cell wall deficient versus normal Mycobacterium Tuberculosis.

Fu YR, Gao KS, Ji R, Yi ZJ.

Int J Biol Sci. 2015 Jan 1;11(1):22-30. doi: 10.7150/ijbs.10217.


Inside or outside the phagosome? The controversy of the intracellular localization of Mycobacterium tuberculosis.

Welin A, Lerm M.

Tuberculosis (Edinb). 2012 Mar;92(2):113-20. doi: 10.1016/ Review.


Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth.

Stanley SA, Barczak AK, Silvis MR, Luo SS, Sogi K, Vokes M, Bray MA, Carpenter AE, Moore CB, Siddiqi N, Rubin EJ, Hung DT.

PLoS Pathog. 2014 Feb 20;10(2):e1003946. doi: 10.1371/journal.ppat.1003946.


Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing.

Rienksma RA, Suarez-Diez M, Mollenkopf HJ, Dolganov GM, Dorhoi A, Schoolnik GK, Martins Dos Santos VA, Kaufmann SH, Schaap PJ, Gengenbacher M.

BMC Genomics. 2015 Feb 5;16:34. doi: 10.1186/s12864-014-1197-2.


Differential producibility analysis (DPA) of transcriptomic data with metabolic networks: deconstructing the metabolic response of M. tuberculosis.

Bonde BK, Beste DJ, Laing E, Kierzek AM, McFadden J.

PLoS Comput Biol. 2011 Jun;7(6):e1002060. doi: 10.1371/journal.pcbi.1002060.


Global transcriptional profile of Mycobacterium tuberculosis during THP-1 human macrophage infection.

Fontán P, Aris V, Ghanny S, Soteropoulos P, Smith I.

Infect Immun. 2008 Feb;76(2):717-25.


Infection of macrophages with Mycobacterium tuberculosis induces global modifications to phagosomal function.

Podinovskaia M, Lee W, Caldwell S, Russell DG.

Cell Microbiol. 2013 Jun;15(6):843-59. doi: 10.1111/cmi.12092.


Genome-wide requirements for Mycobacterium tuberculosis adaptation and survival in macrophages.

Rengarajan J, Bloom BR, Rubin EJ.

Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8327-32.


Truncated hemoglobin, HbN, is post-translationally modified in Mycobacterium tuberculosis and modulates host-pathogen interactions during intracellular infection.

Arya S, Sethi D, Singh S, Hade MD, Singh V, Raju P, Chodisetti SB, Verma D, Varshney GC, Agrewala JN, Dikshit KL.

J Biol Chem. 2013 Oct 11;288(41):29987-99. doi: 10.1074/jbc.M113.507301.


Probing host pathogen cross-talk by transcriptional profiling of both Mycobacterium tuberculosis and infected human dendritic cells and macrophages.

Tailleux L, Waddell SJ, Pelizzola M, Mortellaro A, Withers M, Tanne A, Castagnoli PR, Gicquel B, Stoker NG, Butcher PD, Foti M, Neyrolles O.

PLoS One. 2008 Jan 2;3(1):e1403. doi: 10.1371/journal.pone.0001403.


PE_PGRS proteins are differentially expressed by Mycobacterium tuberculosis in host tissues.

Delogu G, Sanguinetti M, Pusceddu C, Bua A, Brennan MJ, Zanetti S, Fadda G.

Microbes Infect. 2006 Jul;8(8):2061-7.


Express path analysis identifies a tyrosine kinase Src-centric network regulating divergent host responses to Mycobacterium tuberculosis infection.

Karim AF, Chandra P, Chopra A, Siddiqui Z, Bhaskar A, Singh A, Kumar D.

J Biol Chem. 2011 Nov 18;286(46):40307-19. doi: 10.1074/jbc.M111.266239.


Systems biology-based identification of Mycobacterium tuberculosis persistence genes in mouse lungs.

Dutta NK, Bandyopadhyay N, Veeramani B, Lamichhane G, Karakousis PC, Bader JS.

MBio. 2014 Feb 18;5(1). pii: e01066-13. doi: 10.1128/mBio.01066-13.


Combination of host susceptibility and Mycobacterium tuberculosis virulence define gene expression profile in the host.

Beisiegel M, Mollenkopf HJ, Hahnke K, Koch M, Dietrich I, Reece ST, Kaufmann SH.

Eur J Immunol. 2009 Dec;39(12):3369-84. doi: 10.1002/eji.200939615.


Mycobacterium tuberculosis metabolism and host interaction: mysteries and paradoxes.

Ehrt S, Rhee K.

Curr Top Microbiol Immunol. 2013;374:163-88. doi: 10.1007/82_2012_299. Review.

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