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Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

Piednoël M, Aberer AJ, Schneeweiss GM, Macas J, Novak P, Gundlach H, Temsch EM, Renner SS.

Mol Biol Evol. 2012 Nov;29(11):3601-11. doi: 10.1093/molbev/mss168. Epub 2012 Jun 21.


Characterization of the LTR retrotransposon repertoire of a plant clade of six diploid and one tetraploid species.

Piednoël M, Carrete-Vega G, Renner SS.

Plant J. 2013 Aug;75(4):699-709. doi: 10.1111/tpj.12233. Epub 2013 Jun 3.


Diversity and evolution of Ty1-copia and Ty3-gypsy retroelements in the non-photosynthetic flowering plants Orobanche and Phelipanche (Orobanchaceae).

Park JM, Schneeweiss GM, Weiss-Schneeweiss H.

Gene. 2007 Jan 31;387(1-2):75-86. Epub 2006 Aug 24.


Transcriptomes of the parasitic plant family Orobanchaceae reveal surprising conservation of chlorophyll synthesis.

Wickett NJ, Honaas LA, Wafula EK, Das M, Huang K, Wu B, Landherr L, Timko MP, Yoder J, Westwood JH, dePamphilis CW.

Curr Biol. 2011 Dec 20;21(24):2098-104. doi: 10.1016/j.cub.2011.11.011. Epub 2011 Dec 8.


Next generation sequencing reveals genome downsizing in allotetraploid Nicotiana tabacum, predominantly through the elimination of paternally derived repetitive DNAs.

Renny-Byfield S, Chester M, Kovařík A, Le Comber SC, Grandbastien MA, Deloger M, Nichols RA, Macas J, Novák P, Chase MW, Leitch AR.

Mol Biol Evol. 2011 Oct;28(10):2843-54. doi: 10.1093/molbev/msr112. Epub 2011 Apr 21.


Correlated evolution of LTR retrotransposons and genome size in the genus Eleocharis.

Zedek F, Smerda J, Smarda P, Bureš P.

BMC Plant Biol. 2010 Nov 30;10:265. doi: 10.1186/1471-2229-10-265.


Molecular and karyological data confirm that the enigmatic genus Platypholis from Bonin-Islands (SE Japan) is phylogenetically nested within Orobanche (Orobanchaceae).

Li X, Jang TS, Temsch EM, Kato H, Takayama K, Schneeweiss GM.

J Plant Res. 2017 Mar;130(2):273-280. doi: 10.1007/s10265-016-0888-y. Epub 2016 Dec 21.


Recognition of root exudates by seeds of broomrape (Orobanche and Phelipanche) species.

Fernández-Aparicio M, Flores F, Rubiales D.

Ann Bot. 2009 Feb;103(3):423-31. doi: 10.1093/aob/mcn236. Epub 2008 Dec 1.


Transposable elements in a clade of three tetraploids and a diploid relative, focusing on Gypsy amplification.

Piednoël M, Sousa A, Renner SS.

Mob DNA. 2015 Mar 25;6:5. doi: 10.1186/s13100-015-0034-8. eCollection 2015.


Genome-wide characterization of long terminal repeat -retrotransposons in apple reveals the differences in heterogeneity and copy number between Ty1-copia and Ty3-gypsy retrotransposons.

Sun HY, Dai HY, Zhao GL, Ma Y, Ou CQ, Li H, Li LG, Zhang ZH.

J Integr Plant Biol. 2008 Sep;50(9):1130-9. doi: 10.1111/j.1744-7909.2008.00717.x.


Horizontal gene transfer of a plastid gene in the non-photosynthetic flowering plants Orobanche and Phelipanche (Orobanchaceae).

Park JM, Manen JF, Schneeweiss GM.

Mol Phylogenet Evol. 2007 Jun;43(3):974-85. Epub 2006 Oct 17.


Genome-wide analysis of repeat diversity across the family Musaceae.

Novák P, Hřibová E, Neumann P, Koblížková A, Doležel J, Macas J.

PLoS One. 2014 Jun 16;9(6):e98918. doi: 10.1371/journal.pone.0098918. eCollection 2014.


Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species.

Zhang Y, Fernandez-Aparicio M, Wafula EK, Das M, Jiao Y, Wickett NJ, Honaas LA, Ralph PE, Wojciechowski MF, Timko MP, Yoder JI, Westwood JH, Depamphilis CW.

BMC Evol Biol. 2013 Feb 20;13:48. doi: 10.1186/1471-2148-13-48.


Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia.

Macas J, Kejnovský E, Neumann P, Novák P, Koblížková A, Vyskot B.

PLoS One. 2011;6(11):e27335. doi: 10.1371/journal.pone.0027335. Epub 2011 Nov 9. Erratum in: PLoS One. 2011;6(12). doi: 10.1371/annotation/4ccaacb2-92d7-445a-87da-313cedf18feb.


In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

Macas J, Novák P, Pellicer J, Čížková J, Koblížková A, Neumann P, Fuková I, Doležel J, Kelly LJ, Leitch IJ.

PLoS One. 2015 Nov 25;10(11):e0143424. doi: 10.1371/journal.pone.0143424. eCollection 2015.


Phylogeny of holoparasitic Orobanche (Orobanchaceae) inferred from nuclear ITS sequences.

Schneeweiss GM, Colwell A, Park JM, Jang CG, Stuessy TF.

Mol Phylogenet Evol. 2004 Feb;30(2):465-78.


Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton.

Zhao XP, Si Y, Hanson RE, Crane CF, Price HJ, Stelly DM, Wendel JF, Paterson AH.

Genome Res. 1998 May;8(5):479-92. Erratum in: Genome Res 1998 Jun;8(6):682.


Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome.

Cavallini A, Natali L, Zuccolo A, Giordani T, Jurman I, Ferrillo V, Vitacolonna N, Sarri V, Cattonaro F, Ceccarelli M, Cionini PG, Morgante M.

Theor Appl Genet. 2010 Feb;120(3):491-508. doi: 10.1007/s00122-009-1170-7. Epub 2009 Oct 14.


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