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Items: 1 to 20 of 77

1.

RNA-magnesium-protein interactions in large ribosomal subunit.

Petrov AS, Bernier CR, Hsiao C, Okafor CD, Tannenbaum E, Stern J, Gaucher E, Schneider D, Hud NV, Harvey SC, Williams LD.

J Phys Chem B. 2012 Jul 19;116(28):8113-20. doi: 10.1021/jp304723w. Epub 2012 Jul 11.

PMID:
22712611
3.

A recurrent magnesium-binding motif provides a framework for the ribosomal peptidyl transferase center.

Hsiao C, Williams LD.

Nucleic Acids Res. 2009 Jun;37(10):3134-42. doi: 10.1093/nar/gkp119. Epub 2009 Mar 11.

4.

Ab initio molecular dynamics of Na⁺ and Mg²⁺ countercations at the backbone of RNA in water solution.

Kolev S, Petkov PS, Rangelov M, Vayssilov GN.

ACS Chem Biol. 2013 Jul 19;8(7):1576-89. doi: 10.1021/cb300463h. Epub 2013 May 17.

PMID:
23642311
5.

Revisiting the Haloarcula marismortui 50S ribosomal subunit model.

Gabdulkhakov A, Nikonov S, Garber M.

Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):997-1004. doi: 10.1107/S0907444913004745. Epub 2013 May 11.

PMID:
23695244
6.
7.

Bidentate RNA-magnesium clamps: on the origin of the special role of magnesium in RNA folding.

Petrov AS, Bowman JC, Harvey SC, Williams LD.

RNA. 2011 Feb;17(2):291-7. doi: 10.1261/rna.2390311. Epub 2010 Dec 20.

8.
9.

Crystal structure of the S15-rRNA complex.

Nikulin A, Serganov A, Ennifar E, Tishchenko S, Nevskaya N, Shepard W, Portier C, Garber M, Ehresmann B, Ehresmann C, Nikonov S, Dumas P.

Nat Struct Biol. 2000 Apr;7(4):273-7.

PMID:
10742169
10.

Structure of hepatitis C virus IRES subdomain IIa.

Zhao Q, Han Q, Kissinger CR, Hermann T, Thompson PA.

Acta Crystallogr D Biol Crystallogr. 2008 Apr;64(Pt 4):436-43. doi: 10.1107/S0907444908002011. Epub 2008 Mar 19.

PMID:
18391410
11.

The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.

Mueller F, Sommer I, Baranov P, Matadeen R, Stoldt M, Wöhnert J, Görlach M, van Heel M, Brimacombe R.

J Mol Biol. 2000 Apr 21;298(1):35-59.

PMID:
10756104
12.

[Mg2+ ions affect the structure of the central domain of the 18S rRNA in the vicinity of the ribosomal protein S13 binding site].

Ivanov AV, Malygin AA, Karpova GG.

Mol Biol (Mosk). 2013 Jan-Feb;47(1):157-66. Russian.

PMID:
23705505
13.

Refinement of a low-resolution crystal structure to better understand erythromycin interactions on large ribosomal subunit.

Wahab HA, Yam WK, Samian MR, Najimudin N.

J Biomol Struct Dyn. 2008 Aug;26(1):131-46.

PMID:
18533733
14.

Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit.

Schroeder SJ, Blaha G, Moore PB.

Antimicrob Agents Chemother. 2007 Dec;51(12):4462-5. Epub 2007 Jul 30.

15.

Structures of triacetyloleandomycin and mycalamide A bind to the large ribosomal subunit of Haloarcula marismortui.

Gürel G, Blaha G, Steitz TA, Moore PB.

Antimicrob Agents Chemother. 2009 Dec;53(12):5010-4. doi: 10.1128/AAC.00817-09. Epub 2009 Sep 8.

16.

Evidence for a thermodynamically distinct Mg2+ ion associated with formation of an RNA tertiary structure.

Leipply D, Draper DE.

J Am Chem Soc. 2011 Aug 31;133(34):13397-405. doi: 10.1021/ja2020923. Epub 2011 Aug 4.

17.

Effects of site-directed mutations in the central domain of 16 S ribosomal RNA upon ribosomal protein binding, RNA processing and 30 S subunit assembly.

Stark MJ, Gregory RJ, Gourse RL, Thurlow DL, Zwieb C, Zimmermann RA, Dahlberg AE.

J Mol Biol. 1984 Sep 15;178(2):303-22.

PMID:
6208367
18.

A-minor tertiary interactions in RNA kink-turns. Molecular dynamics and quantum chemical analysis.

Réblová K, Šponer JE, Špačková N, Beššeová I, Šponer J.

J Phys Chem B. 2011 Dec 1;115(47):13897-910. doi: 10.1021/jp2065584. Epub 2011 Nov 7.

PMID:
21999672
19.

Molecular contacts between antibiotics and the 30S ribosomal particle.

Wirmer J, Westhof E.

Methods Enzymol. 2006;415:180-202.

PMID:
17116475
20.

Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures.

Grilley D, Soto AM, Draper DE.

Proc Natl Acad Sci U S A. 2006 Sep 19;103(38):14003-8. Epub 2006 Sep 11.

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