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Items: 1 to 20 of 76

1.

Bluues server: electrostatic properties of wild-type and mutated protein structures.

Walsh I, Minervini G, Corazza A, Esposito G, Tosatto SC, Fogolari F.

Bioinformatics. 2012 Aug 15;28(16):2189-90. doi: 10.1093/bioinformatics/bts343.

2.

Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii.

Fogolari F, Corazza A, Yarra V, Jalaru A, Viglino P, Esposito G.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S18. doi: 10.1186/1471-2105-13-S4-S18.

3.

webPIPSA: a web server for the comparison of protein interaction properties.

Richter S, Wenzel A, Stein M, Gabdoulline RR, Wade RC.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W276-80. doi: 10.1093/nar/gkn181.

4.

PBEQ-Solver for online visualization of electrostatic potential of biomolecules.

Jo S, Vargyas M, Vasko-Szedlar J, Roux B, Im W.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W270-5. doi: 10.1093/nar/gkn314.

5.

RING: networking interacting residues, evolutionary information and energetics in protein structures.

Martin AJ, Vidotto M, Boscariol F, Di Domenico T, Walsh I, Tosatto SC.

Bioinformatics. 2011 Jul 15;27(14):2003-5. doi: 10.1093/bioinformatics/btr191.

6.

Patch Finder Plus (PFplus): a web server for extracting and displaying positive electrostatic patches on protein surfaces.

Shazman S, Celniker G, Haber O, Glaser F, Mandel-Gutfreund Y.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W526-30.

7.

MOBI: a web server to define and visualize structural mobility in NMR protein ensembles.

Martin AJ, Walsh I, Tosatto SC.

Bioinformatics. 2010 Nov 15;26(22):2916-7. doi: 10.1093/bioinformatics/btq537.

8.

POOL server: machine learning application for functional site prediction in proteins.

Somarowthu S, Ondrechen MJ.

Bioinformatics. 2012 Aug 1;28(15):2078-9. doi: 10.1093/bioinformatics/bts321.

9.

MolSurfer: A macromolecular interface navigator.

Gabdoulline RR, Wade RC, Walther D.

Nucleic Acids Res. 2003 Jul 1;31(13):3349-51.

10.

TESE: generating specific protein structure test set ensembles.

Sirocco F, Tosatto SC.

Bioinformatics. 2008 Nov 15;24(22):2632-3. doi: 10.1093/bioinformatics/btn488.

11.

Trypano-PPI: a web server for prediction of unique targets in trypanosome proteome by using electrostatic parameters of protein-protein interactions.

Rodriguez-Soca Y, Munteanu CR, Dorado J, Pazos A, Prado-Prado FJ, González-Díaz H.

J Proteome Res. 2010 Feb 5;9(2):1182-90. doi: 10.1021/pr900827b.

PMID:
19947655
12.

Electrostatic design of protein-protein association rates.

Schreiber G, Shaul Y, Gottschalk KE.

Methods Mol Biol. 2006;340:235-49. Review.

PMID:
16957340
13.

LIBP-Pred: web server for lipid binding proteins using structural network parameters; PDB mining of human cancer biomarkers and drug targets in parasites and bacteria.

González-Díaz H, Munteanu CR, Postelnicu L, Prado-Prado F, Gestal M, Pazos A.

Mol Biosyst. 2012 Mar;8(3):851-62. doi: 10.1039/c2mb05432a.

PMID:
22234525
14.

PHEPS: web-based pH-dependent Protein Electrostatics Server.

Kantardjiev AA, Atanasov BP.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W43-7.

15.

MovieMaker: a web server for rapid rendering of protein motions and interactions.

Maiti R, Van Domselaar GH, Wishart DS.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W358-62.

16.

PCE: web tools to compute protein continuum electrostatics.

Miteva MA, Tufféry P, Villoutreix BO.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W372-5.

17.

The Multi-Q web server for multiplexed protein quantitation.

Yu CY, Tsui YH, Yian YH, Sung TY, Hsu WL.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W707-12.

18.

BetaTPred: prediction of beta-TURNS in a protein using statistical algorithms.

Kaur H, Raghava GP.

Bioinformatics. 2002 Mar;18(3):498-9.

19.

VLDP web server: a powerful geometric tool for analysing protein structures in their environment.

Esque J, Léonard S, de Brevern AG, Oguey C.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W373-8. doi: 10.1093/nar/gkt509.

20.

eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.

Kinoshita K, Murakami Y, Nakamura H.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W398-402.

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