Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 105

1.

Identifying protein complexes from interactome based on essential proteins and local fitness method.

Wang J, Chen G, Liu B, Li M, Pan Y.

IEEE Trans Nanobioscience. 2012 Dec;11(4):324-35. doi: 10.1109/TNB.2012.2197863. Epub 2012 Jun 12.

PMID:
22711784
2.

Identifying protein complexes based on density and modularity in protein-protein interaction network.

Ren J, Wang J, Li M, Wang L.

BMC Syst Biol. 2013;7 Suppl 4:S12. doi: 10.1186/1752-0509-7-S4-S12. Epub 2013 Oct 23.

3.

Identifying hierarchical and overlapping protein complexes based on essential protein-protein interactions and "seed-expanding" method.

Ren J, Zhou W, Wang J.

Biomed Res Int. 2014;2014:838714. doi: 10.1155/2014/838714. Epub 2014 Jun 30.

4.

MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure.

Srihari S, Ning K, Leong HW.

BMC Bioinformatics. 2010 Oct 12;11:504. doi: 10.1186/1471-2105-11-504.

5.

Modifying the DPClus algorithm for identifying protein complexes based on new topological structures.

Li M, Chen JE, Wang JX, Hu B, Chen G.

BMC Bioinformatics. 2008 Sep 25;9:398. doi: 10.1186/1471-2105-9-398.

6.

Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy.

Chen B, Shi J, Zhang S, Wu FX.

Proteomics. 2013 Jan;13(2):269-77. doi: 10.1002/pmic.201200336. Epub 2012 Nov 29.

PMID:
23112006
7.

Interaction graph mining for protein complexes using local clique merging.

Li XL, Tan SH, Foo CS, Ng SK.

Genome Inform. 2005;16(2):260-9.

PMID:
16901108
8.

A hybrid clustering algorithm for identifying modules in Protein-Protein Interaction networks.

Yu L, Gao L, Sun PG.

Int J Data Min Bioinform. 2010;4(5):600-15.

PMID:
21133044
9.

Efficient and accurate Greedy Search Methods for mining functional modules in protein interaction networks.

He J, Li C, Ye B, Zhong W.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S19. doi: 10.1186/1471-2105-13-S10-S19.

10.

Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data.

Li M, Wu X, Wang J, Pan Y.

BMC Bioinformatics. 2012 May 23;13:109. doi: 10.1186/1471-2105-13-109.

11.

Mining Dense Overlapping Subgraphs in weighted protein-protein interaction networks.

Lee AJ, Lin MC, Hsu CM.

Biosystems. 2011 Mar;103(3):392-9. doi: 10.1016/j.biosystems.2010.11.010. Epub 2010 Nov 21.

PMID:
21095218
12.

Identifying protein complexes from interaction networks based on clique percolation and distance restriction.

Wang J, Liu B, Li M, Pan Y.

BMC Genomics. 2010 Nov 2;11 Suppl 2:S10. doi: 10.1186/1471-2164-11-S2-S10.

13.

Combining functional and topological properties to identify core modules in protein interaction networks.

Lubovac Z, Gamalielsson J, Olsson B.

Proteins. 2006 Sep 1;64(4):948-59.

PMID:
16794996
14.

Complex discovery from weighted PPI networks.

Liu G, Wong L, Chua HN.

Bioinformatics. 2009 Aug 1;25(15):1891-7. doi: 10.1093/bioinformatics/btp311. Epub 2009 May 12.

PMID:
19435747
15.

Detection of protein complexes using a protein ranking algorithm.

Zaki N, Berengueres J, Efimov D.

Proteins. 2012 Oct;80(10):2459-68. doi: 10.1002/prot.24130. Epub 2012 Jul 7.

PMID:
22685080
16.

Identifying the overlapping complexes in protein interaction networks.

Li M, Wang J, Chen J, Cai Z, Chen G.

Int J Data Min Bioinform. 2010;4(1):91-108.

PMID:
20376924
17.

A local average connectivity-based method for identifying essential proteins from the network level.

Li M, Wang J, Chen X, Wang H, Pan Y.

Comput Biol Chem. 2011 Jun;35(3):143-50. doi: 10.1016/j.compbiolchem.2011.04.002. Epub 2011 Apr 30.

PMID:
21704260
18.

Identification of Protein Complexes Using Weighted PageRank-Nibble Algorithm and Core-Attachment Structure.

Peng W, Wang J, Zhao B, Wang L.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Jan-Feb;12(1):179-92. doi: 10.1109/TCBB.2014.2343954.

PMID:
26357088
19.

Identifying protein complexes based on the integration of PPI network and gene expression data.

Chen W, Li M, Wu X, Wang J.

Int J Bioinform Res Appl. 2015;11(1):30-44. doi: 10.1504/IJBRA.2015.067337.

PMID:
25667384
20.

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

BMC Bioinformatics. 2006 Apr 14;7:207.

Supplemental Content

Support Center