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Items: 1 to 20 of 113

1.

Characterization of enhancer function from genome-wide analyses.

Maston GA, Landt SG, Snyder M, Green MR.

Annu Rev Genomics Hum Genet. 2012;13:29-57. doi: 10.1146/annurev-genom-090711-163723. Epub 2012 Jun 11. Review.

PMID:
22703170
2.

On the identification of potential regulatory variants within genome wide association candidate SNP sets.

Chen CY, Chang IS, Hsiung CA, Wasserman WW.

BMC Med Genomics. 2014 Jun 11;7:34. doi: 10.1186/1755-8794-7-34.

3.

High-throughput identification of long-range regulatory elements and their target promoters in the human genome.

Hwang YC, Zheng Q, Gregory BD, Wang LS.

Nucleic Acids Res. 2013 May;41(9):4835-46. doi: 10.1093/nar/gkt188. Epub 2013 Mar 21.

4.

Integration of 198 ChIP-seq datasets reveals human cis-regulatory regions.

Bolouri H, Ruzzo WL.

J Comput Biol. 2012 Sep;19(9):989-97. doi: 10.1089/cmb.2012.0100. Epub 2012 Aug 16.

PMID:
22897152
5.

Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters.

Kininis M, Chen BS, Diehl AG, Isaacs GD, Zhang T, Siepel AC, Clark AG, Kraus WL.

Mol Cell Biol. 2007 Jul;27(14):5090-104. Epub 2007 May 21.

6.

Enhancer function: mechanistic and genome-wide insights come together.

Plank JL, Dean A.

Mol Cell. 2014 Jul 3;55(1):5-14. doi: 10.1016/j.molcel.2014.06.015. Review.

7.

High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq.

Vanhille L, Griffon A, Maqbool MA, Zacarias-Cabeza J, Dao LT, Fernandez N, Ballester B, Andrau JC, Spicuglia S.

Nat Commun. 2015 Apr 15;6:6905. doi: 10.1038/ncomms7905.

PMID:
25872643
8.

Genome-wide map of regulatory interactions in the human genome.

Heidari N, Phanstiel DH, He C, Grubert F, Jahanbani F, Kasowski M, Zhang MQ, Snyder MP.

Genome Res. 2014 Dec;24(12):1905-17. doi: 10.1101/gr.176586.114. Epub 2014 Sep 16.

9.

A high resolution genome-wide scan of HNF4α recognition sites infers a regulatory gene network in colon cancer.

Weltmeier F, Borlak J.

PLoS One. 2011;6(7):e21667. doi: 10.1371/journal.pone.0021667. Epub 2011 Jul 28.

11.

ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.

Lefrançois P, Zheng W, Snyder M.

Methods Enzymol. 2010;470:77-104. doi: 10.1016/S0076-6879(10)70004-5. Epub 2010 Mar 1.

PMID:
20946807
12.
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14.

Evolutionary conservation of zinc finger transcription factor binding sites in promoters of genes co-expressed with WT1 in prostate cancer.

Eisermann K, Tandon S, Bazarov A, Brett A, Fraizer G, Piontkivska H.

BMC Genomics. 2008 Jul 16;9:337. doi: 10.1186/1471-2164-9-337.

15.

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns.

Roh TY, Wei G, Farrell CM, Zhao K.

Genome Res. 2007 Jan;17(1):74-81. Epub 2006 Nov 29.

16.

Transcription of the histone H5 gene is regulated by three differentiation-specific enhancers.

Rousseau S, Asselin M, Renaud J, Ruiz-Carrillo A.

Mol Cell Biol. 1993 Aug;13(8):4904-17.

17.

De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.

Niu M, Tabari ES, Su Z.

BMC Genomics. 2014 Dec 2;15:1047. doi: 10.1186/1471-2164-15-1047.

18.

The human enhancer blocker CTC-binding factor interacts with the transcription factor Kaiso.

Defossez PA, Kelly KF, Filion GJ, Pérez-Torrado R, Magdinier F, Menoni H, Nordgaard CL, Daniel JM, Gilson E.

J Biol Chem. 2005 Dec 30;280(52):43017-23. Epub 2005 Oct 17.

19.

Identification of estrogen-responsive genes using a genome-wide analysis of promoter elements for transcription factor binding sites.

Kamalakaran S, Radhakrishnan SK, Beck WT.

J Biol Chem. 2005 Jun 3;280(22):21491-7. Epub 2005 Mar 24.

20.

Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.

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