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Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples.

Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, Gevers D, Huttenhower C, Izard J.

Genome Biol. 2012 Jun 14;13(6):R42. doi: 10.1186/gb-2012-13-6-r42.


Oral cavity contains distinct niches with dynamic microbial communities.

Xu X, He J, Xue J, Wang Y, Li K, Zhang K, Guo Q, Liu X, Zhou Y, Cheng L, Li M, Li Y, Li Y, Shi W, Zhou X.

Environ Microbiol. 2015 Mar;17(3):699-710. doi: 10.1111/1462-2920.12502. Epub 2014 Jun 11.


The human oral microbiome.

Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG.

J Bacteriol. 2010 Oct;192(19):5002-17. doi: 10.1128/JB.00542-10. Epub 2010 Jul 23.


Defining the "core microbiome" of the microbial communities in the tonsils of healthy pigs.

Lowe BA, Marsh TL, Isaacs-Cosgrove N, Kirkwood RN, Kiupel M, Mulks MH.

BMC Microbiol. 2012 Feb 7;12:20. doi: 10.1186/1471-2180-12-20.


Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis.

Huang S, Yang F, Zeng X, Chen J, Li R, Wen T, Li C, Wei W, Liu J, Chen L, Davis C, Xu J.

BMC Oral Health. 2011 Dec 12;11:33. doi: 10.1186/1472-6831-11-33.


Comparison of the Oral Microbiomes of Canines and Their Owners Using Next-Generation Sequencing.

Oh C, Lee K, Cheong Y, Lee SW, Park SY, Song CS, Choi IS, Lee JB.

PLoS One. 2015 Jul 2;10(7):e0131468. doi: 10.1371/journal.pone.0131468. eCollection 2015.


Oral microbiome composition changes in mouse models of colitis.

Rautava J, Pinnell LJ, Vong L, Akseer N, Assa A, Sherman PM.

J Gastroenterol Hepatol. 2015 Mar;30(3):521-7. doi: 10.1111/jgh.12713.


Microbiome assembly across multiple body sites in low-birthweight infants.

Costello EK, Carlisle EM, Bik EM, Morowitz MJ, Relman DA.

MBio. 2013 Oct 29;4(6):e00782-13. doi: 10.1128/mBio.00782-13.


A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response.

Schwartz S, Friedberg I, Ivanov IV, Davidson LA, Goldsby JS, Dahl DB, Herman D, Wang M, Donovan SM, Chapkin RS.

Genome Biol. 2012 Apr 30;13(4):r32. doi: 10.1186/gb-2012-13-4-r32.


Oligotyping analysis of the human oral microbiome.

Eren AM, Borisy GG, Huse SM, Mark Welch JL.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):E2875-84. doi: 10.1073/pnas.1409644111. Epub 2014 Jun 25.


Topographical and temporal diversity of the human skin microbiome.

Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC; NISC Comparative Sequencing Program, Bouffard GG, Blakesley RW, Murray PR, Green ED, Turner ML, Segre JA.

Science. 2009 May 29;324(5931):1190-2. doi: 10.1126/science.1171700.


Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities.

Yildirim S, Yeoman CJ, Sipos M, Torralba M, Wilson BA, Goldberg TL, Stumpf RM, Leigh SR, White BA, Nelson KE.

PLoS One. 2010 Nov 12;5(11):e13963. doi: 10.1371/journal.pone.0013963.


Supragingival Microbial Profiles of Permanent and Deciduous Teeth in Children with Mixed Dentition.

Shi W, Qin M, Chen F, Xia B.

PLoS One. 2016 Jan 11;11(1):e0146938. doi: 10.1371/journal.pone.0146938. eCollection 2016.


Study of inter- and intra-individual variations in the salivary microbiota.

Lazarevic V, Whiteson K, Hernandez D, François P, Schrenzel J.

BMC Genomics. 2010 Sep 28;11:523. doi: 10.1186/1471-2164-11-523.


Bacterial community variation in human body habitats across space and time.

Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R.

Science. 2009 Dec 18;326(5960):1694-7. doi: 10.1126/science.1177486. Epub 2009 Nov 5.


The dynamic distribution of porcine microbiota across different ages and gastrointestinal tract segments.

Zhao W, Wang Y, Liu S, Huang J, Zhai Z, He C, Ding J, Wang J, Wang H, Fan W, Zhao J, Meng H.

PLoS One. 2015 Feb 17;10(2):e0117441. doi: 10.1371/journal.pone.0117441. eCollection 2015.


Bacterial community composition of the gut microbiota of Cylindroiulus fulviceps (diplopoda) as revealed by molecular fingerprinting and cloning.

Knapp BA, Seeber J, Rief A, Meyer E, Insam H.

Folia Microbiol (Praha). 2010 Sep;55(5):489-96. doi: 10.1007/s12223-010-0081-y. Epub 2010 Oct 13.


Defining the normal bacterial flora of the oral cavity.

Aas JA, Paster BJ, Stokes LN, Olsen I, Dewhirst FE.

J Clin Microbiol. 2005 Nov;43(11):5721-32.


Microbial geography of the oral cavity.

Simón-Soro A, Tomás I, Cabrera-Rubio R, Catalan MD, Nyvad B, Mira A.

J Dent Res. 2013 Jul;92(7):616-21. doi: 10.1177/0022034513488119. Epub 2013 May 14.


Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing.

Ling Z, Kong J, Jia P, Wei C, Wang Y, Pan Z, Huang W, Li L, Chen H, Xiang C.

Microb Ecol. 2010 Oct;60(3):677-90. doi: 10.1007/s00248-010-9712-8. Epub 2010 Jul 8.


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