Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 101

1.

QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation.

Ma ZQ, Polzin KO, Dasari S, Chambers MC, Schilling B, Gibson BW, Tran BQ, Vega-Montoto L, Liebler DC, Tabb DL.

Anal Chem. 2012 Jul 17;84(14):5845-50. doi: 10.1021/ac300629p. Epub 2012 Jun 27.

2.

QC metrics from CPTAC raw LC-MS/MS data interpreted through multivariate statistics.

Wang X, Chambers MC, Vega-Montoto LJ, Bunk DM, Stein SE, Tabb DL.

Anal Chem. 2014 Mar 4;86(5):2497-509. doi: 10.1021/ac4034455. Epub 2014 Feb 17.

3.

A proteomics performance standard to support measurement quality in proteomics.

Beasley-Green A, Bunk D, Rudnick P, Kilpatrick L, Phinney K.

Proteomics. 2012 Apr;12(7):923-31. doi: 10.1002/pmic.201100522.

PMID:
22522798
4.

SQID: an intensity-incorporated protein identification algorithm for tandem mass spectrometry.

Li W, Ji L, Goya J, Tan G, Wysocki VH.

J Proteome Res. 2011 Apr 1;10(4):1593-602. doi: 10.1021/pr100959y. Epub 2011 Feb 23.

5.

Instrumentation for LC-MS/MS in proteomics.

Chalkley R.

Methods Mol Biol. 2010;658:47-60. doi: 10.1007/978-1-60761-780-8_3. Review.

PMID:
20839097
6.

Implementation of statistical process control for proteomic experiments via LC MS/MS.

Bereman MS, Johnson R, Bollinger J, Boss Y, Shulman N, MacLean B, Hoofnagle AN, MacCoss MJ.

J Am Soc Mass Spectrom. 2014 Apr;25(4):581-7. doi: 10.1007/s13361-013-0824-5. Epub 2014 Feb 5.

7.
8.

SIMPATIQCO: a server-based software suite which facilitates monitoring the time course of LC-MS performance metrics on Orbitrap instruments.

Pichler P, Mazanek M, Dusberger F, Weilnböck L, Huber CG, Stingl C, Luider TM, Straube WL, Köcher T, Mechtler K.

J Proteome Res. 2012 Nov 2;11(11):5540-7. doi: 10.1021/pr300163u. Epub 2012 Oct 22.

9.

Statistical Assessment of QC Metrics on Raw LC-MS/MS Data.

Wang X.

Methods Mol Biol. 2017;1550:325-337. doi: 10.1007/978-1-4939-6747-6_22.

PMID:
28188539
10.

Proteomics Quality Control: Quality Control Software for MaxQuant Results.

Bielow C, Mastrobuoni G, Kempa S.

J Proteome Res. 2016 Mar 4;15(3):777-87. doi: 10.1021/acs.jproteome.5b00780. Epub 2015 Dec 28.

PMID:
26653327
11.

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses.

Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, Schilling B, Tabb DL, Tegeler TJ, Vega-Montoto L, Variyath AM, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Carr SA, Fisher SJ, Gibson BW, Paulovich AG, Regnier FE, Rodriguez H, Spiegelman C, Tempst P, Liebler DC, Stein SE.

Mol Cell Proteomics. 2010 Feb;9(2):225-41. doi: 10.1074/mcp.M900223-MCP200. Epub 2009 Oct 16.

12.

Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS).

Abbatiello SE, Mani DR, Schilling B, Maclean B, Zimmerman LJ, Feng X, Cusack MP, Sedransk N, Hall SC, Addona T, Allen S, Dodder NG, Ghosh M, Held JM, Hedrick V, Inerowicz HD, Jackson A, Keshishian H, Kim JW, Lyssand JS, Riley CP, Rudnick P, Sadowski P, Shaddox K, Smith D, Tomazela D, Wahlander A, Waldemarson S, Whitwell CA, You J, Zhang S, Kinsinger CR, Mesri M, Rodriguez H, Borchers CH, Buck C, Fisher SJ, Gibson BW, Liebler D, Maccoss M, Neubert TA, Paulovich A, Regnier F, Skates SJ, Tempst P, Wang M, Carr SA.

Mol Cell Proteomics. 2013 Sep;12(9):2623-39. doi: 10.1074/mcp.M112.027078. Epub 2013 May 20.

13.

IPeak: An open source tool to combine results from multiple MS/MS search engines.

Wen B, Du C, Li G, Ghali F, Jones AR, Käll L, Xu S, Zhou R, Ren Z, Feng Q, Xu X, Wang J.

Proteomics. 2015 Sep;15(17):2916-20. doi: 10.1002/pmic.201400208. Epub 2015 Aug 6.

PMID:
25951428
14.

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R.

BMC Bioinformatics. 2008 Dec 9;9:529. doi: 10.1186/1471-2105-9-529.

15.

Development and performance evaluation of an ultralow flow nanoliquid chromatography-tandem mass spectrometry set-up.

Köcher T, Pichler P, De Pra M, Rieux L, Swart R, Mechtler K.

Proteomics. 2014 Sep;14(17-18):1999-2007. doi: 10.1002/pmic.201300418. Epub 2014 Jul 14.

PMID:
24920484
16.

Yield of 6,000 proteins by 1D nLC-MS/MS without pre-fractionation.

Anagnostopoulos AK, Stravopodis DJ, Tsangaris GT.

J Chromatogr B Analyt Technol Biomed Life Sci. 2017 Mar 15;1047:92-96. doi: 10.1016/j.jchromb.2016.08.031. Epub 2016 Aug 21.

PMID:
27605470
17.

ScanRanker: Quality assessment of tandem mass spectra via sequence tagging.

Ma ZQ, Chambers MC, Ham AJ, Cheek KL, Whitwell CW, Aerni HR, Schilling B, Miller AW, Caprioli RM, Tabb DL.

J Proteome Res. 2011 Jul 1;10(7):2896-904. doi: 10.1021/pr200118r. Epub 2011 Apr 26.

18.

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.

Mueller LN, Brusniak MY, Mani DR, Aebersold R.

J Proteome Res. 2008 Jan;7(1):51-61. doi: 10.1021/pr700758r. Epub 2008 Jan 4. Review.

PMID:
18173218
19.

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.

Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, Brusniak MY, Vitek O, Aebersold R, Müller M.

Proteomics. 2007 Oct;7(19):3470-80.

PMID:
17726677
20.

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.

Jaitly N, Mayampurath A, Littlefield K, Adkins JN, Anderson GA, Smith RD.

BMC Bioinformatics. 2009 Mar 17;10:87. doi: 10.1186/1471-2105-10-87.

Supplemental Content

Support Center