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Items: 1 to 20 of 90

1.

KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa.

Lobo FP, Rodrigues MR, Rodrigues GO, Hilário HO, Souza RA, Tauch A, Miyoshi A, Franco GC, Azevedo V, Franco GR.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W491-7. doi: 10.1093/nar/gks490. Epub 2012 Jun 6.

2.

DEFOG: discrete enrichment of functionally organized genes.

Wittkop T, Berman AE, Fleisch KM, Mooney SD.

Integr Biol (Camb). 2012 Jul;4(7):795-804. doi: 10.1039/c2ib00136e. Epub 2012 Jun 18.

3.

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics.

Tabas-Madrid D, Nogales-Cadenas R, Pascual-Montano A.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W478-83. doi: 10.1093/nar/gks402. Epub 2012 May 9.

4.
5.

GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways.

Martinez-Guerrero CE, Ciria R, Abreu-Goodger C, Moreno-Hagelsieb G, Merino E.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W176-80. doi: 10.1093/nar/gkn330. Epub 2008 May 29.

6.
7.

An automated graphics tool for comparative genomics: the Coulson plot generator.

Field HI, Coulson RM, Field MC.

BMC Bioinformatics. 2013 Apr 27;14:141. doi: 10.1186/1471-2105-14-141.

8.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

9.

Evolution of lactic acid bacteria in the order Lactobacillales as depicted by analysis of glycolysis and pentose phosphate pathways.

Salvetti E, Fondi M, Fani R, Torriani S, Felis GE.

Syst Appl Microbiol. 2013 Jul;36(5):291-305. doi: 10.1016/j.syapm.2013.03.009. Epub 2013 Jun 2.

PMID:
23735786
10.

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees.

Zhang H, Gao S, Lercher MJ, Hu S, Chen WH.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W569-72. doi: 10.1093/nar/gks576. Epub 2012 Jun 13.

11.

IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.

Zhang F, Drabier R.

BMC Bioinformatics. 2012;13 Suppl 15:S7. doi: 10.1186/1471-2105-13-S15-S7. Epub 2012 Sep 11.

12.

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48. doi: 10.1186/1471-2105-10-48.

13.

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

Al-Shahrour F, Minguez P, Tárraga J, Montaner D, Alloza E, Vaquerizas JM, Conde L, Blaschke C, Vera J, Dopazo J.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W472-6.

14.

Proteny: discovering and visualizing statistically significant syntenic clusters at the proteome level.

Gehrmann T, Reinders MJ.

Bioinformatics. 2015 Nov 1;31(21):3437-44. doi: 10.1093/bioinformatics/btv389. Epub 2015 Jun 27.

15.

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.

Cruveiller S, Le Saux J, Vallenet D, Lajus A, Bocs S, Médigue C.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W471-9.

16.

EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae.

Florea L, McClelland M, Riemer C, Schwartz S, Miller W.

Nucleic Acids Res. 2003 Jul 1;31(13):3527-32.

17.

MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes.

Neph S, Tompa M.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W366-8.

18.

Visual annotation display (VLAD): a tool for finding functional themes in lists of genes.

Richardson JE, Bult CJ.

Mamm Genome. 2015 Oct;26(9-10):567-73. doi: 10.1007/s00335-015-9570-2. Epub 2015 Jun 6.

19.

SyntTax: a web server linking synteny to prokaryotic taxonomy.

Oberto J.

BMC Bioinformatics. 2013 Jan 16;14:4. doi: 10.1186/1471-2105-14-4.

20.

WEGO: a web tool for plotting GO annotations.

Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L, Wang J.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W293-7.

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